Gene
| Gene Model ID | pfu_aug1.0_270.1_07455 |
|---|---|
| Locus | scaffold270.1 : 90182 ... 97731 : - |
| To GenomeBrowser | scaffold270.1:90182..97731 |
| Genes list of scaffold | scaffold270.1 |
| Synonym | pfu_aug2.0_282.1_07299 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_270.1_07455.t1 | 2 | 1 | PDZ | 6 | 59 | 1.1e-25 | 89.6 | 5.8e-15 | 2.2e-11 | 43.7 |
| pfu_aug1.0_270.1_07455.t1 | 2 | 1 | PDZ_2 | 6 | 39 | 1.0e-08 | 34.9 | 7.0e-09 | 2.6e-05 | 24.0 |
| pfu_aug1.0_270.1_07455.t1 | 2 | 2 | PDZ | 116 | 184 | 1.1e-25 | 89.6 | 1.5e-15 | 5.7e-12 | 45.6 |
| pfu_aug1.0_270.1_07455.t1 | 2 | 2 | PDZ_2 | 131 | 173 | 1.0e-08 | 34.9 | 0.0004 | 1.5 | 8.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_270.1_07455.t1 | gi|241053658|ref|XP_002407609.1| | pdzk7, putative [Ixodes scapularis] | 3.00018e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_270.1_07455.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_270.1_07455.t1 gctttgagcatggtattgggatatttgtgtcccaggtagaccccggcagtcaggcagaagctaaaggtctaaaagttggt gatgagatagtgagagtgaatggatttactatagcagaagccatacatgatgaggtactaaatctgatcaagggacggca ggagatagaactcaaagtaacaaacattggaatgttgccaattaaggagagggcttcagatcctgtcacatggtcctatg tagacaaagatactaaaactaatgtgagaaaaggacaagagatgggtgtaacacataagaaatcagcagcagatgaagta aagctttttgtcaatttaaggagtgccacttccctaggatgcagtattttaagtggtccccgacacttcccaggaatatt tgtagagagagtaaacccaggaagtctgggagaggagatagggattcaagtaggcgatcagttcatagatgtcaacggaa ctagttttatggacataactcacagagaagctgtggttgctttgaagagtagtaaggagcttaacattgttatacggaaa ggaactggattgccactagtacagaaatctggtgatgtccctccacagtccagctctacaataaaccaccctgcagaggt ccacgcccctccctccacctcaccccaggggaatcaaaggtatgactcggcatcagaggagtctgaagatgaaagtacaa tcgtcatggagatggacaaatag |
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Protein
| Protein ID | pfu_aug1.0_270.1_07455.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_270.1_07455.t1 FEHGIGIFVSQVDPGSQAEAKGLKVGDEIVRVNGFTIAEAIHDEVLNLIKGRQEIELKVTNIGMLPIKERASDPVTWSYV DKDTKTNVRKGQEMGVTHKKSAADEVKLFVNLRSATSLGCSILSGPRHFPGIFVERVNPGSLGEEIGIQVGDQFIDVNGT SFMDITHREAVVALKSSKELNIVIRKGTGLPLVQKSGDVPPQSSSTINHPAEVHAPPSTSPQGNQRYDSASEESEDESTI VMEMDK |
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