Gene
| Gene Model ID | pfu_aug1.0_2701.1_44459 |
|---|---|
| Locus | scaffold2701.1 : 55706 ... 70829 : + |
| To GenomeBrowser | scaffold2701.1:55706..70829 |
| Genes list of scaffold | scaffold2701.1 |
| Synonym | pfu_aug2.0_599.1_30969 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2701.1_44459.t1 | 3 | 1 | LRR_4 | 38 | 71 | 8.9e-12 | 44.3 | 9.2e-08 | 0.00023 | 20.7 |
| pfu_aug1.0_2701.1_44459.t1 | 6 | 1 | LRR_6 | 39 | 58 | 1.4e-17 | 61.7 | 4.2e-06 | 0.01 | 15.7 |
| pfu_aug1.0_2701.1_44459.t1 | 6 | 2 | LRR_6 | 61 | 88 | 1.4e-17 | 61.7 | 0.01 | 25.0 | 5.3 |
| pfu_aug1.0_2701.1_44459.t1 | 6 | 3 | LRR_6 | 91 | 114 | 1.4e-17 | 61.7 | 0.00024 | 0.59 | 10.3 |
| pfu_aug1.0_2701.1_44459.t1 | 3 | 2 | LRR_4 | 93 | 130 | 8.9e-12 | 44.3 | 2.4e-06 | 0.0059 | 16.2 |
| pfu_aug1.0_2701.1_44459.t1 | 6 | 4 | LRR_6 | 117 | 141 | 1.4e-17 | 61.7 | 0.00015 | 0.37 | 11.0 |
| pfu_aug1.0_2701.1_44459.t1 | 3 | 3 | LRR_4 | 135 | 158 | 8.9e-12 | 44.3 | 0.0009 | 2.2 | 7.9 |
| pfu_aug1.0_2701.1_44459.t1 | 6 | 5 | LRR_6 | 144 | 164 | 1.4e-17 | 61.7 | 1.2e-05 | 0.03 | 14.3 |
| pfu_aug1.0_2701.1_44459.t1 | 6 | 6 | LRR_6 | 171 | 191 | 1.4e-17 | 61.7 | 0.022 | 55.0 | 4.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2701.1_44459.t1 | gi|156391949|ref|XP_001635812.1| | predicted protein [Nematostella vectensis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2701.1_44459.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2701.1_44459.t1 atggagacccctccgaccgtcaaaattttaggttttggcaaatgcaagactcttttagatgcgtcagtacattttattac tttagttatgctaaatggaaaggtagtccatgagtctttacgagtccttgatttgagtgagtcagatatatcagaccagg gtttgtctagtctccgcagatgtccgaagttacagaaaattgaccttaattctgccaaaaagtctagaactatggtaaca tcacaaggtatcatatccatgtcccagtcttgtcataacttacaaacagtatatctacgcagatgtctaaatataaccga cgaggccgtcatatcattatcagaaaattgtccgcagctcagactcctcaatgtgggaggatgtacattactcacagatc aatcattacagttcctcgctcagaattccaaattcctcaaatgtctcaatatgtcaaatacaaaggtaacagataatggt gtcatagctcttacatcaggacagtgtgctcaaactctcaaggagattcatatcaatggttgtgtagcccttacagatga agcagtagaagcagtactgcagttttgtccactcatagaaatcctgctcttccatgcatgtccaaaaatcacagagaatt ccaggcaagctctcgaggatctgacaattcagcggaaatctccgatgaaacaagtaacatggacaatatactga |
|
Protein
| Protein ID | pfu_aug1.0_2701.1_44459.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2701.1_44459.t1 METPPTVKILGFGKCKTLLDASVHFITLVMLNGKVVHESLRVLDLSESDISDQGLSSLRRCPKLQKIDLNSAKKSRTMVT SQGIISMSQSCHNLQTVYLRRCLNITDEAVISLSENCPQLRLLNVGGCTLLTDQSLQFLAQNSKFLKCLNMSNTKVTDNG VIALTSGQCAQTLKEIHINGCVALTDEAVEAVLQFCPLIEILLFHACPKITENSRQALEDLTIQRKSPMKQVTWTIY |
|