Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_271489.1_35944
Locus scaffold271489.1 : 1 ... 338 : -
To GenomeBrowser scaffold271489.1:1..338
Genes list of scaffold scaffold271489.1
Synonym pfu_aug2.0_10.1_00005

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_271489.1_35944.t1 1 1 Na_H_Exchanger 9 81 5.3e-12 44.9 1.8e-15 5.4e-12 44.9

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_271489.1_35944.t1 gi|47571339|gb|AAT35815.1| sodium/hydrogen exchanger NHE1 [Helix aspersa] 9.0e-24

Transcript
Transcript IDpfu_aug1.0_271489.1_35944.t1
Definition-
>pfu_aug1.0_271489.1_35944.t1
atgatggagggatttatcaagatcggtgagaaagacatcataaccacggacattgttaaaggcatcagctccttcttcat
catcgccatcgggggaacgctgatcggggtcatcttcggtttcttcggaggatttattacgaaatacaccaagcatgtca
aggtcattgagccactttttgtcttcatcatcggatatcttatgtaccttacagctgagatggtccacttctctagtata
ttagc

Protein
Protein IDpfu_aug1.0_271489.1_35944.t1
Definition-
>pfu_aug1.0_271489.1_35944.t1
MMEGFIKIGEKDIITTDIVKGISSFFIIAIGGTLIGVIFGFFGGFITKYTKHVKVIEPLFVFIIGYLMYLTAEMVHFSSI
L

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