Gene
| Gene Model ID | pfu_aug1.0_2718.1_23059 |
|---|---|
| Locus | scaffold2718.1 : 14176 ... 42540 : + |
| To GenomeBrowser | scaffold2718.1:14176..42540 |
| Genes list of scaffold | scaffold2718.1 |
| Synonym | pfu_aug2.0_3042.1_09047 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2718.1_23059.t1 | 2 | 1 | SMC_N | 112 | 169 | 9.2e-10 | 38.1 | 0.6 | 990.0 | -1.3 |
| pfu_aug1.0_2718.1_23059.t1 | 2 | 2 | SMC_N | 292 | 584 | 9.2e-10 | 38.1 | 5.6e-13 | 9.2e-10 | 38.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2718.1_23059.t1 | gi|260787331|ref|XP_002588707.1| | hypothetical protein BRAFLDRAFT_131216 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| >Adult tissues | |
| maleGonad | 3 |
Transcript
| Transcript ID | pfu_aug1.0_2718.1_23059.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2718.1_23059.t1 atgccacttttagaaatgctgcaactttcacacatccgaccaggagccgtcaacgtatacgcgcagatgtctaaacgaaa gcatccagaagatgaagatgtggatgatgattccatggatttgtcccaagcagaacttggcaatgaaaagtttttcctca aagctacgcagttggaacagatgaaattggattacagcagggcaaatgaacagaaagaagttactaaagtgatgatagaa aagaaaaaagagtcattgcctacacttgctactgaagtcctgaagttggaacagcaattcaaatcactaacagcagtcaa tgatctaaaagcaaaaatgaagaaacttaaagaagaaatggcttgggcatttgtgattgccaaggaaagggcaaaagtag atgattgtgtaaaacgacataaagcaattcaagaggagttgaagagaacaagtgaagaagtgaatgtactgagacctcag tttgatgaagccaagaaagacttgaatgaaaagaagaaaaatgctcgtaatgctcagagaggaattgaaagtatcttgct gataccagaggggagggatgctcgagagtttatggaccctgataattctggtggtccgccaaggggatgtaacgaggagc gaaatccaaaagttagacagagatcggaggcagttaatgacgaaatcaacaaaaacaaacgggaagaaaaacgggccgaa actcagctgatgaaaatcaatgaaaagatcagagagctcaagaatgaaatctacgaactgaaaagcattgaagacccagt accagtcgatgttagcacattggaagaagaggtagacaatttaacagagcagatcagcaagatagaaatattacatgggg aaaaatcggctaagtacagtgaagtggaaaatataatgaaagagtccgataaacggttcaaggatgtagagcaagccatg agacagaaggcagaagtgggagaacctcttaaggatgatttaggaagagtccagttggagatcgaacaagccaagtcaca caaaaaacattatgaacagacactgaaggaacaagaaaagaaagtaggagaactcaagaagaaaatggaaaattatggaa aagaaattgagagtgacacagagaaagccaaaaagattaagccagatcgtataaatacaaggcgctcggtgcaaaacttg gaaagtgagatctgccagattgagaaacaaatcaaaactgaagaaaagagtcgtggtgatccagaggagataacaagaaa gtaccatgatcaaaaggaagcctacttgggaattcaaagggaggttggacaatgcaatacttttctctctcaccttcagc gggttatggttcatcgccagcagcaatattcagagctccggagactgatcgcaatgagagccaagtatttcttcattgtt ttgctggcaaatcggaattataccggcaagatgaaatttaatcacttaaaagagactttagaaatgtctgtacaacctca cgttacccaggaggagggagctaaggacctgaggtctctgtccggaggggagaggtcgttctccaccgtctgttttattc tgtccctctgggacgccatggaagctccgttcagatgccttgacgaatttgatgtgttcatggacatggtcaatagaaga atatctatggatatgatgctgaaagttgccgagaatcaaccacaacgacagtttatctttctcactccacaaaacatgag ccaacttggaatacatactgcatccttgaatattttccgaatgcctgatccggatagaggctctggtgttctgccattta gacgatcaacaaatcagagtcaagatgaagaagatgaataa |
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Protein
| Protein ID | pfu_aug1.0_2718.1_23059.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2718.1_23059.t1 MPLLEMLQLSHIRPGAVNVYAQMSKRKHPEDEDVDDDSMDLSQAELGNEKFFLKATQLEQMKLDYSRANEQKEVTKVMIE KKKESLPTLATEVLKLEQQFKSLTAVNDLKAKMKKLKEEMAWAFVIAKERAKVDDCVKRHKAIQEELKRTSEEVNVLRPQ FDEAKKDLNEKKKNARNAQRGIESILLIPEGRDAREFMDPDNSGGPPRGCNEERNPKVRQRSEAVNDEINKNKREEKRAE TQLMKINEKIRELKNEIYELKSIEDPVPVDVSTLEEEVDNLTEQISKIEILHGEKSAKYSEVENIMKESDKRFKDVEQAM RQKAEVGEPLKDDLGRVQLEIEQAKSHKKHYEQTLKEQEKKVGELKKKMENYGKEIESDTEKAKKIKPDRINTRRSVQNL ESEICQIEKQIKTEEKSRGDPEEITRKYHDQKEAYLGIQREVGQCNTFLSHLQRVMVHRQQQYSELRRLIAMRAKYFFIV LLANRNYTGKMKFNHLKETLEMSVQPHVTQEEGAKDLRSLSGGERSFSTVCFILSLWDAMEAPFRCLDEFDVFMDMVNRR ISMDMMLKVAENQPQRQFIFLTPQNMSQLGIHTASLNIFRMPDPDRGSGVLPFRRSTNQSQDEEDE |
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