Gene
Gene Model ID | pfu_aug1.0_2718.1_23059 |
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Locus | scaffold2718.1 : 14176 ... 42540 : + |
To GenomeBrowser | scaffold2718.1:14176..42540 |
Genes list of scaffold | scaffold2718.1 |
Synonym | pfu_aug2.0_3042.1_09047 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_2718.1_23059.t1 | 2 | 1 | SMC_N | 112 | 169 | 9.2e-10 | 38.1 | 0.6 | 990.0 | -1.3 |
pfu_aug1.0_2718.1_23059.t1 | 2 | 2 | SMC_N | 292 | 584 | 9.2e-10 | 38.1 | 5.6e-13 | 9.2e-10 | 38.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_2718.1_23059.t1 | gi|260787331|ref|XP_002588707.1| | hypothetical protein BRAFLDRAFT_131216 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
egg-4cell | 1 |
>Adult tissues | |
maleGonad | 3 |
Transcript
Transcript ID | pfu_aug1.0_2718.1_23059.t1 |
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Definition | - |
>pfu_aug1.0_2718.1_23059.t1 atgccacttttagaaatgctgcaactttcacacatccgaccaggagccgtcaacgtatacgcgcagatgtctaaacgaaa gcatccagaagatgaagatgtggatgatgattccatggatttgtcccaagcagaacttggcaatgaaaagtttttcctca aagctacgcagttggaacagatgaaattggattacagcagggcaaatgaacagaaagaagttactaaagtgatgatagaa aagaaaaaagagtcattgcctacacttgctactgaagtcctgaagttggaacagcaattcaaatcactaacagcagtcaa tgatctaaaagcaaaaatgaagaaacttaaagaagaaatggcttgggcatttgtgattgccaaggaaagggcaaaagtag atgattgtgtaaaacgacataaagcaattcaagaggagttgaagagaacaagtgaagaagtgaatgtactgagacctcag tttgatgaagccaagaaagacttgaatgaaaagaagaaaaatgctcgtaatgctcagagaggaattgaaagtatcttgct gataccagaggggagggatgctcgagagtttatggaccctgataattctggtggtccgccaaggggatgtaacgaggagc gaaatccaaaagttagacagagatcggaggcagttaatgacgaaatcaacaaaaacaaacgggaagaaaaacgggccgaa actcagctgatgaaaatcaatgaaaagatcagagagctcaagaatgaaatctacgaactgaaaagcattgaagacccagt accagtcgatgttagcacattggaagaagaggtagacaatttaacagagcagatcagcaagatagaaatattacatgggg aaaaatcggctaagtacagtgaagtggaaaatataatgaaagagtccgataaacggttcaaggatgtagagcaagccatg agacagaaggcagaagtgggagaacctcttaaggatgatttaggaagagtccagttggagatcgaacaagccaagtcaca caaaaaacattatgaacagacactgaaggaacaagaaaagaaagtaggagaactcaagaagaaaatggaaaattatggaa aagaaattgagagtgacacagagaaagccaaaaagattaagccagatcgtataaatacaaggcgctcggtgcaaaacttg gaaagtgagatctgccagattgagaaacaaatcaaaactgaagaaaagagtcgtggtgatccagaggagataacaagaaa gtaccatgatcaaaaggaagcctacttgggaattcaaagggaggttggacaatgcaatacttttctctctcaccttcagc gggttatggttcatcgccagcagcaatattcagagctccggagactgatcgcaatgagagccaagtatttcttcattgtt ttgctggcaaatcggaattataccggcaagatgaaatttaatcacttaaaagagactttagaaatgtctgtacaacctca cgttacccaggaggagggagctaaggacctgaggtctctgtccggaggggagaggtcgttctccaccgtctgttttattc tgtccctctgggacgccatggaagctccgttcagatgccttgacgaatttgatgtgttcatggacatggtcaatagaaga atatctatggatatgatgctgaaagttgccgagaatcaaccacaacgacagtttatctttctcactccacaaaacatgag ccaacttggaatacatactgcatccttgaatattttccgaatgcctgatccggatagaggctctggtgttctgccattta gacgatcaacaaatcagagtcaagatgaagaagatgaataa |
Protein
Protein ID | pfu_aug1.0_2718.1_23059.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2718.1_23059.t1 MPLLEMLQLSHIRPGAVNVYAQMSKRKHPEDEDVDDDSMDLSQAELGNEKFFLKATQLEQMKLDYSRANEQKEVTKVMIE KKKESLPTLATEVLKLEQQFKSLTAVNDLKAKMKKLKEEMAWAFVIAKERAKVDDCVKRHKAIQEELKRTSEEVNVLRPQ FDEAKKDLNEKKKNARNAQRGIESILLIPEGRDAREFMDPDNSGGPPRGCNEERNPKVRQRSEAVNDEINKNKREEKRAE TQLMKINEKIRELKNEIYELKSIEDPVPVDVSTLEEEVDNLTEQISKIEILHGEKSAKYSEVENIMKESDKRFKDVEQAM RQKAEVGEPLKDDLGRVQLEIEQAKSHKKHYEQTLKEQEKKVGELKKKMENYGKEIESDTEKAKKIKPDRINTRRSVQNL ESEICQIEKQIKTEEKSRGDPEEITRKYHDQKEAYLGIQREVGQCNTFLSHLQRVMVHRQQQYSELRRLIAMRAKYFFIV LLANRNYTGKMKFNHLKETLEMSVQPHVTQEEGAKDLRSLSGGERSFSTVCFILSLWDAMEAPFRCLDEFDVFMDMVNRR ISMDMMLKVAENQPQRQFIFLTPQNMSQLGIHTASLNIFRMPDPDRGSGVLPFRRSTNQSQDEEDE |