Gene
Gene Model ID | pfu_aug1.0_2718.1_23060 |
---|---|
Locus | scaffold2718.1 : 48306 ... 54858 : + |
To GenomeBrowser | scaffold2718.1:48306..54858 |
Genes list of scaffold | scaffold2718.1 |
Synonym | NA |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-orphan-HLH-k-a |
Description | Best hit to NP_064706 max-binding protein MNT by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_2718.1_23060.t1 | 1 | 1 | HLH | 148 | 196 | 4.7e-10 | 39.0 | 6.7e-14 | 9.9e-10 | 37.9 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_2718.1_23060.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2718.1_23060.t1 atgccatcgaccagtacgcctgtgagtgcatttcgtgttttaaaaccactcaaaaccaacaacaggtattattacactcc ccaccctagtactggacagcagctgctctatattactgacgatcaagcatccccacagctataccacaaactcaaaccac gaaaatccaagacacctaaaacgtcagcaaagaagtcggaatccgacagtcaattcaagacaccaaggataagagttgcg cctaatactgccataaacagtagtacatgtagcagtggcgaggaggttgttgccgccacctcagaagcaccaccaaagaa gttggaatcttcctccaccaaaccaaaggagcttgttatagaaccagtgctaacagtggaggaaaaactggcccaactgt tggcaccaagctatgaagccgccggggacggagaggagacgagagaacaacataacctaaaagagagacgaagaagggct cgcatcaaggacgcctgtgatattatgaggaaactggtacctggtatgtgtgacaagacagacaaagccacagtgttcga attcgccgcccgctacatttacttcctgaaagaattcacaggcaacggacatgacaaggattttcttaagaagtacagtc cgtattag |
Protein
Protein ID | pfu_aug1.0_2718.1_23060.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2718.1_23060.t1 MPSTSTPVSAFRVLKPLKTNNRYYYTPHPSTGQQLLYITDDQASPQLYHKLKPRKSKTPKTSAKKSESDSQFKTPRIRVA PNTAINSSTCSSGEEVVAATSEAPPKKLESSSTKPKELVIEPVLTVEEKLAQLLAPSYEAAGDGEETREQHNLKERRRRA RIKDACDIMRKLVPGMCDKTDKATVFEFAARYIYFLKEFTGNGHDKDFLKKYSPY |