Gene
| Gene Model ID | pfu_aug1.0_2718.1_23060 |
|---|---|
| Locus | scaffold2718.1 : 48306 ... 54858 : + |
| To GenomeBrowser | scaffold2718.1:48306..54858 |
| Genes list of scaffold | scaffold2718.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-orphan-HLH-k-a |
| Description | Best hit to NP_064706 max-binding protein MNT by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2718.1_23060.t1 | 1 | 1 | HLH | 148 | 196 | 4.7e-10 | 39.0 | 6.7e-14 | 9.9e-10 | 37.9 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2718.1_23060.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2718.1_23060.t1 atgccatcgaccagtacgcctgtgagtgcatttcgtgttttaaaaccactcaaaaccaacaacaggtattattacactcc ccaccctagtactggacagcagctgctctatattactgacgatcaagcatccccacagctataccacaaactcaaaccac gaaaatccaagacacctaaaacgtcagcaaagaagtcggaatccgacagtcaattcaagacaccaaggataagagttgcg cctaatactgccataaacagtagtacatgtagcagtggcgaggaggttgttgccgccacctcagaagcaccaccaaagaa gttggaatcttcctccaccaaaccaaaggagcttgttatagaaccagtgctaacagtggaggaaaaactggcccaactgt tggcaccaagctatgaagccgccggggacggagaggagacgagagaacaacataacctaaaagagagacgaagaagggct cgcatcaaggacgcctgtgatattatgaggaaactggtacctggtatgtgtgacaagacagacaaagccacagtgttcga attcgccgcccgctacatttacttcctgaaagaattcacaggcaacggacatgacaaggattttcttaagaagtacagtc cgtattag |
|
Protein
| Protein ID | pfu_aug1.0_2718.1_23060.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2718.1_23060.t1 MPSTSTPVSAFRVLKPLKTNNRYYYTPHPSTGQQLLYITDDQASPQLYHKLKPRKSKTPKTSAKKSESDSQFKTPRIRVA PNTAINSSTCSSGEEVVAATSEAPPKKLESSSTKPKELVIEPVLTVEEKLAQLLAPSYEAAGDGEETREQHNLKERRRRA RIKDACDIMRKLVPGMCDKTDKATVFEFAARYIYFLKEFTGNGHDKDFLKKYSPY |
|