Gene
Gene Model ID | pfu_aug1.0_27375.1_04572 |
---|---|
Locus | scaffold27375.1 : 1 ... 11522 : + |
To GenomeBrowser | scaffold27375.1:1..11522 |
Genes list of scaffold | scaffold27375.1 |
Synonym | pfu_aug2.0_357.1_23919 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | C1q domain containing protein |
Description | Best hit to MgC1q10. 112 bits, 4e-23 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_27375.1_04572.t1 | 1 | 1 | C1q | 18 | 110 | 1.1e-19 | 70.7 | 8.8e-24 | 1.3e-19 | 70.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_27375.1_04572.t1 | gi|325504319|emb|CBX41659.1| | putative C1q domain containing protein MgC1q10 [Mytilus galloprovincialis] | 3.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_27375.1_04572.t1 |
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Definition | - |
>pfu_aug1.0_27375.1_04572.t1 gaattcccaatttcttccctgcagtacgagtagcacatacagataaatatgtagcattttctgtcggtctaacgcacaac ctgaactattcatctgccgtcaacataacgtacgacaaggttttcctcaacctaggagatggttacgatataaatacagg aattttcacgtgccctcacgcgggaacgtacgcttttctgattcatggattatcccagagtgtctcacagttgaaccttg acttgtaccggaacaacgattacattgtgagtgcctatgcacatgctcgaaatgattacgcttccgcccatcaagctgtt gtactgaaactatatgaatgtaagtga |
Protein
Protein ID | pfu_aug1.0_27375.1_04572.t1 |
---|---|
Definition | - |
>pfu_aug1.0_27375.1_04572.t1 IPNFFPAVRVAHTDKYVAFSVGLTHNLNYSSAVNITYDKVFLNLGDGYDINTGIFTCPHAGTYAFLIHGLSQSVSQLNLD LYRNNDYIVSAYAHARNDYASAHQAVVLKLYECK |