Gene
| Gene Model ID | pfu_aug1.0_2745.1_15921 |
|---|---|
| Locus | scaffold2745.1 : 49406 ... 54795 : - |
| To GenomeBrowser | scaffold2745.1:49406..54795 |
| Genes list of scaffold | scaffold2745.1 |
| Synonym | pfu_aug2.0_802.1_07907 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2745.1_15921.t1 | 2 | 1 | RVT_1 | 127 | 154 | 1.5e-21 | 76.7 | 0.16 | 610.0 | -0.4 |
| pfu_aug1.0_2745.1_15921.t1 | 2 | 2 | RVT_1 | 324 | 484 | 1.5e-21 | 76.7 | 1.5e-24 | 5.4e-21 | 74.9 |
| pfu_aug1.0_2745.1_15921.t1 | 1 | 1 | rve | 591 | 644 | 1.2e-12 | 48.0 | 7.1e-16 | 2.6e-12 | 46.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2745.1_15921.t1 | gi|326671759|ref|XP_003199518.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_2745.1_15921.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2745.1_15921.t1 atgaagtcggactgcactataacattgaaagctgtgaatggattgaatataccttatgtcggttatgtggagctagatat acgttgtgcagggaaattgtttgagaaaagaggattcctgatcgtaaaagattccgtagatcaatgtacgcggaaacgca aagaagtagttcctggaataatcggaatgaacatcatcaacgaatgtaggaatattttattatcaagtgacttaccgtca aatggctttttaacagaaatttttaaatcgattgatagagagggaaggaagtcaactattcgagtggcaagagttaacgg tacttcgtcagtacacattccagggaataccgtagtcgttattcagtgcactgcccctcacgtagatcacgatgttttga tcgagccgttaaccaatgtatcgcatttacatagacacttgaaaatcgtgcgcactttcgcgcatattgaaagaggatgc gtatttatcagagttgccaatgttggtgatgaggatatatatgtcaagcctaggacatggataggggtgatctcaaaatg cgaaacagagcagaaatctgatgtcatgtttgaacattcatatgttggtagttcggaggagatatttattagtcagcaat gtaaagtatccgaaatgagtacaggggtggatccaaattttcatttaccagaggatgtttacagactgaattgtacaaag gaagaaaaggatcttataacgaactgtttccagaaacacagtgatgttttctccaaagatgatgatgatattggccatac gagtaccgttacgcatagaattacccttacagataatcagcctatttctcagccatatcgtcgcattccaccgtcgcaat ttaaggaagtgaagttacatattcgtaagctgttagacaataaaatcatcagagaaagtaccagcccattcgctgctccg atcggtctagtacgtaaaaaggacaattcgttgaggctatgcgtcgattatcgtaaattaaatgccaatactgtcaagga caaatttccgttatctcgtctcgaagaaacatttgacgcattacatgggtccgttatgttttcaacgatggacttaacag ccggctataaccagattgaggtcgcttgtgatgacaaggagaaaacagcatttacaactccgtttgggcattatgagttt gacagaatgccatttgggcttacgaacgcccctgcgacatttcagaggttaatgcaacattgttttcgatatgaagtttt caataccttactcgtatttttggatgacatcattgtttattccaagacactggaggagcatatacaacgactcgataaag tatttaccattttgagaaagtatggactgaaattaaagatgcgtaaatgtagtttcttccatcaatctgtgaaatatatt ggtcacgtggttagcaaggatggaatttccaccgacaatgacaagatcgagtgcataagaaactggaaaataccggaaac gagtaaagaagtaaagtctttcctgggttttgccgggtattaccggagatttatacgcaacttttcgcaaattgcggagc cattattggaaatttcgaaatataacttaaagcacccgaaaacaaaatttggagacaagtggaccgaaaaatgtcaaaaa tcgtttgatcaactgagagatgtgttgacgtctgcaccgctacttggatatgcagattttacgattccgtttatcgtgga gacagacgcattcggaatttgtaaacgtttgcattctgacctagggaaatgttttgaagcggaaattatacaacagctct gtaaaatttataacaccaagaagtcgaggacgaccgcatatcatccccaaggaaacggtcaatgcgaacgcttcaatcgg actttgcatgacttactgcgttcgttgtcacctgcgaggaaaaggaagtggccggaatatatcaaggagttggtattttc ctacaacgttacacctcatgcgtccactggatactcaccgttttttctaatgtacggacgacagccgaatttacccgttg attttctgcttggacggaattctgatgaaaatgacgtcgatatcgatattgatcgatgggtcgagttacacacggaacag ttaagttttgcatacaagtgtgccgtacaggaatcgcgtaaaaacgaaaaacagccgagcaattacacgattccgggaag tcagaaaacgaattttncggttggaacgaaggtgtatgtccgaaacagaggaattaaaggtcgttacaaaattcaggaca aatggaaatctgatccatatattgtcatcggtaaaccttttaaatccgtttacactgtgaaaccagagaaagatgttgga ccggtgaaaaatgttaacaggtctgcatttctgagttatcttttcatattatattgcatctgtgctgtattttcagtatc tattgtgacatttgaatgtgacgaatattga |
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Protein
| Protein ID | pfu_aug1.0_2745.1_15921.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2745.1_15921.t1 MKSDCTITLKAVNGLNIPYVGYVELDIRCAGKLFEKRGFLIVKDSVDQCTRKRKEVVPGIIGMNIINECRNILLSSDLPS NGFLTEIFKSIDREGRKSTIRVARVNGTSSVHIPGNTVVVIQCTAPHVDHDVLIEPLTNVSHLHRHLKIVRTFAHIERGC VFIRVANVGDEDIYVKPRTWIGVISKCETEQKSDVMFEHSYVGSSEEIFISQQCKVSEMSTGVDPNFHLPEDVYRLNCTK EEKDLITNCFQKHSDVFSKDDDDIGHTSTVTHRITLTDNQPISQPYRRIPPSQFKEVKLHIRKLLDNKIIRESTSPFAAP IGLVRKKDNSLRLCVDYRKLNANTVKDKFPLSRLEETFDALHGSVMFSTMDLTAGYNQIEVACDDKEKTAFTTPFGHYEF DRMPFGLTNAPATFQRLMQHCFRYEVFNTLLVFLDDIIVYSKTLEEHIQRLDKVFTILRKYGLKLKMRKCSFFHQSVKYI GHVVSKDGISTDNDKIECIRNWKIPETSKEVKSFLGFAGYYRRFIRNFSQIAEPLLEISKYNLKHPKTKFGDKWTEKCQK SFDQLRDVLTSAPLLGYADFTIPFIVETDAFGICKRLHSDLGKCFEAEIIQQLCKIYNTKKSRTTAYHPQGNGQCERFNR TLHDLLRSLSPARKRKWPEYIKELVFSYNVTPHASTGYSPFFLMYGRQPNLPVDFLLGRNSDENDVDIDIDRWVELHTEQ LSFAYKCAVQESRKNEKQPSNYTIPGSQKTNFXVGTKVYVRNRGIKGRYKIQDKWKSDPYIVIGKPFKSVYTVKPEKDVG PVKNVNRSAFLSYLFILYCICAVFSVSIVTFECDEY |
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