Gene
| Gene Model ID | pfu_aug1.0_2756.1_23069 |
|---|---|
| Locus | scaffold2756.1 : 9786 ... 24879 : + |
| To GenomeBrowser | scaffold2756.1:9786..24879 |
| Genes list of scaffold | scaffold2756.1 |
| Synonym | pfu_aug2.0_1616.1_21712 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2756.1_23069.t1 | 1 | 1 | Reprolysin_5 | 11 | 181 | 6.3e-25 | 88.2 | 7.5e-28 | 1.0e-24 | 87.5 |
| pfu_aug1.0_2756.1_23069.t1 | 1 | 1 | Reprolysin_4 | 17 | 193 | 2.6e-16 | 59.7 | 3.2e-19 | 4.3e-16 | 59.0 |
| pfu_aug1.0_2756.1_23069.t1 | 1 | 1 | Reprolysin_3 | 20 | 147 | 2.3e-11 | 44.2 | 3.5e-14 | 4.7e-11 | 43.2 |
| pfu_aug1.0_2756.1_23069.t1 | 1 | 1 | Reprolysin_2 | 25 | 192 | 4.0e-23 | 82.3 | 4.9e-26 | 6.6e-23 | 81.6 |
| pfu_aug1.0_2756.1_23069.t1 | 1 | 1 | Reprolysin | 128 | 201 | 8.5e-07 | 28.7 | 2.3e-09 | 3.1e-06 | 26.9 |
| pfu_aug1.0_2756.1_23069.t1 | 2 | 1 | adh_short | 130 | 170 | 4.3e-11 | 43.0 | 0.97 | 1300.0 | -0.9 |
| pfu_aug1.0_2756.1_23069.t1 | 2 | 2 | adh_short | 247 | 365 | 4.3e-11 | 43.0 | 1.4e-13 | 1.9e-10 | 40.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2756.1_23069.t1 | gi|260825444|ref|XP_002607676.1| | hypothetical protein BRAFLDRAFT_82878 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_2756.1_23069.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2756.1_23069.t1 atgtctgacgtcattttccgaggtaccgatttcgatggagacggcgttggtgacaacgttggattcgaaatttcgcaaat aacaattttctcggattcgaatgcgaacgattacagaatgggtgatacaagcatgaatgctcaagattatttgaacgcat tttcaacatacaaccacgatcagttttgtcttggcattgcttttacgtaccgagatttctctgacggacttgtaggactc gcatgggtagcaagctcagatatatacggacctgtcggcggaatttgtcaacggcgggtctacgttccttcgaaaaataa ggtatacagttacaacactgccatggtaacgatgattaactacggcgcgcgactaccaagctataaagccgcccttgtgt taactcatgagttcggacatagtttcggaagctctcacgacaaaagtggcaacaacgcatgctcaccaggtggacaatac ggaaattacatcatgcatgcttacgcaagtaacggtggtctaccaaacaatgataaattctcaacgtgtagcgtcaatag tatttatccagttatcatgcacaaggggacatgcttaatcgaaagaacgggtccatattgcggaaatagcgtaaccgaga acggcgaagaatgcgattgtgttaataccactgtatttacgagtcgagtggagcagtctgtctacatagcaaagaaagac atggacattagacgagcaagaattatcatggcttgtagagacatgaagaggaccgaacccgcggcagaggaactacggac tgacaccggaaataaaaacatcgtggtgcgcaaactcgatcttgcgtcgctaaaatcagtaagaagttttgcagaggaaa ttctcaaaacggagtcaagaattgatatactgataaataatgcaggtgtgatgtactgcccatactccaaaactgccgat ggattcgagatgcagttcggcaccaatcacctgggtccgttcctgttaacgaatatgttgttagatagaatcaaagactc cgctcctgccaggattgtcaacgtgtcatcgattggtcattctcttgcaaatccgcttgatcttgaaaatctgaacagtg agaaggggtacgatccgtacgaagcatatcatcgcagcaaactactcaacgttctcttcaccagggaacttagcaaacga ctcaaaggtgcgtag |
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Protein
| Protein ID | pfu_aug1.0_2756.1_23069.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2756.1_23069.t1 MSDVIFRGTDFDGDGVGDNVGFEISQITIFSDSNANDYRMGDTSMNAQDYLNAFSTYNHDQFCLGIAFTYRDFSDGLVGL AWVASSDIYGPVGGICQRRVYVPSKNKVYSYNTAMVTMINYGARLPSYKAALVLTHEFGHSFGSSHDKSGNNACSPGGQY GNYIMHAYASNGGLPNNDKFSTCSVNSIYPVIMHKGTCLIERTGPYCGNSVTENGEECDCVNTTVFTSRVEQSVYIAKKD MDIRRARIIMACRDMKRTEPAAEELRTDTGNKNIVVRKLDLASLKSVRSFAEEILKTESRIDILINNAGVMYCPYSKTAD GFEMQFGTNHLGPFLLTNMLLDRIKDSAPARIVNVSSIGHSLANPLDLENLNSEKGYDPYEAYHRSKLLNVLFTRELSKR LKGA |
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