Gene
| Gene Model ID | pfu_aug1.0_2759.1_66448 |
|---|---|
| Locus | scaffold2759.1 : 3536 ... 17748 : + |
| To GenomeBrowser | scaffold2759.1:3536..17748 |
| Genes list of scaffold | scaffold2759.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2759.1_66448.t1 | 2 | 1 | ALS2CR8 | 159 | 379 | 0.0 | 161.9 | 0.0 | 0.0 | 161.9 |
| pfu_aug1.0_2759.1_66448.t1 | 2 | 2 | ALS2CR8 | 443 | 478 | 0.0 | 161.9 | 0.17 | 2600.0 | -2.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2759.1_66448.t1 | gi|260825472|ref|XP_002607690.1| | hypothetical protein BRAFLDRAFT_82864 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_2759.1_66448.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2759.1_66448.t1 atgacaaatccaacattacagggtttattgtccacccccacccaccagctactaacaactaacgaaggaatacagatcat tgccttgagtggaacaaatgacctgatgccaaaccagggagatggaagggtgtggcaactcgtccctgacatggccacac ttatagcagtaactgacccctcacaaacacaaacaaagcagatagaggaggttgcccatgctgaaattgtagaagattcg gacagccgaggatcaaatgaggtatccagtgccacatctaccgaagacaacattctgatgcctccccctcctcaacctct accacccgatacaccacagtgggctaggcgactgctttgttgtgagaaaataggtgactcgtacagaggatatgtggaga cagaggtagaactggaccttctcctgacgtatcacaaacagcagacacagagcttctggggaacacggcaatcaccgagt ccagcaaaaccctcaacaaggcttatgtggaagtcacaatatgtaccgtttgacggaatacctttcgttaactctggaag cagagctgttgttatggaatgtcaatttggaccaagaaggaagggaagtaactctagaaataaagttgtggatcagtcag tcaagcccacgactccatacaagcagacctgtccagcacgaatatacataaagaaggtcagaaagtttcctgagtatgct gtggacatgaatctagataaaaaggcaatgaagacagacatggacaaagctttccatgaacttaaaagtcagaacttaca aactattggacaagaaagattctatgtacaattaccaacagagaaggcacacgagttccatgcggatgctatggccagca catcaggaaatgatgaagttccagagttcactgaaaaaaccacggaatctaaacaaagacttgaccctcgtgtcgccagt aaaataagggatattgttgcatctggagaaactcagatttactcagtcagaaaaaaactgagacattatgtcgtacgaga tttatatggtggtcaggaggtaccagagagacatgatttgacgttgtttccgacagttaatgatctgaagaaccatatac accaggcctgtagggatattgagaatggttcacttcctatctcagctccacaggtgaatgtagagatagtacagaacaca cggggtaactaccagtctatggacccctccctgtggcaggcttcctccggggggagattggagggcagcgagccagtacc ggagacagttactgttacactaacacagaatcctggtgaagatgggcaccatgtgatatctcgtattgagacccacctga gtgacggtacaacaaagattagtactcatctcacaccagaaacagcacagctgttgtccaaacttcatcctaacatgttc ccagctggctttctcaaaccggagcctgtggaggagtcatgtgatcaggacataacgaatgacgtacaggacatggcgga ctcagtacaggacatcactgatacagtggaggatgtaggaatcgagggggtccttaaaacagatccagaaagtggtatct ccatagatactccccaccctatccctgactccatgcaggatatagaatctctggctatagtctctaataccgaccaggct tcacagagcatactgggagtcagtatggtagactcgtgtacggatctgggtcacagtgataatactggatctatagtgac agaggcagatgaaggtagtagaattgaggaccactttgtgactgtttctatgacggcagatggaagtggaatcattctcg aggatacgggagtttcatag |
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Protein
| Protein ID | pfu_aug1.0_2759.1_66448.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2759.1_66448.t1 MTNPTLQGLLSTPTHQLLTTNEGIQIIALSGTNDLMPNQGDGRVWQLVPDMATLIAVTDPSQTQTKQIEEVAHAEIVEDS DSRGSNEVSSATSTEDNILMPPPPQPLPPDTPQWARRLLCCEKIGDSYRGYVETEVELDLLLTYHKQQTQSFWGTRQSPS PAKPSTRLMWKSQYVPFDGIPFVNSGSRAVVMECQFGPRRKGSNSRNKVVDQSVKPTTPYKQTCPARIYIKKVRKFPEYA VDMNLDKKAMKTDMDKAFHELKSQNLQTIGQERFYVQLPTEKAHEFHADAMASTSGNDEVPEFTEKTTESKQRLDPRVAS KIRDIVASGETQIYSVRKKLRHYVVRDLYGGQEVPERHDLTLFPTVNDLKNHIHQACRDIENGSLPISAPQVNVEIVQNT RGNYQSMDPSLWQASSGGRLEGSEPVPETVTVTLTQNPGEDGHHVISRIETHLSDGTTKISTHLTPETAQLLSKLHPNMF PAGFLKPEPVEESCDQDITNDVQDMADSVQDITDTVEDVGIEGVLKTDPESGISIDTPHPIPDSMQDIESLAIVSNTDQA SQSILGVSMVDSCTDLGHSDNTGSIVTEADEGSRIEDHFVTVSMTADGSGIILEDTGVS |
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