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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_2759.1_66452
Locus scaffold2759.1 : 58359 ... 75445 : -
To GenomeBrowser scaffold2759.1:58359..75445
Genes list of scaffold scaffold2759.1
Synonym pfu_aug2.0_287.1_23811

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_2759.1_66452.t1 2 1 C2 125 211 0.0 161.1 4.2e-29 6.3e-25 86.8
pfu_aug1.0_2759.1_66452.t1 2 2 C2 256 343 0.0 161.1 1.1e-24 1.6e-20 72.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_2759.1_66452.t1 gi|327278866|ref|XP_003224181.1| 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
maleGonad 1

Transcript
Transcript IDpfu_aug1.0_2759.1_66452.t1
Definition-
>pfu_aug1.0_2759.1_66452.t1
atgcttttctcctttctcagatttgagaggccagggaggaaccaccaggtggtgacagagaatgtccagcctaatctggc
cacacatacgtcattacacgagtccctgggatcacgaagctctactggcagcaactatcagaccatgacaccttcacata
agccactgtctcaatccaattccaaaaattcagcgagcgctgatgatgtcaacagtagcctctggaagggcatgcgcaat
atcgcctttacacttatggacaacgcagacgaggaggctatggaagcgacccctatcgacccctcggagggtgtggattg
tcaactcggaagaattcagttcgcaattagttacgattttcagaacttgacactgtctcttaaaatcctgcaagctcaaa
gtttgccagcaaaagactttaccggaacaagtgatccgtatgtgaaaataatgctccttccggacaaaaaacacaaactt
gttacaaaagtgaaaaagaaaaacttgaatccgagatggaatgaatgctttctatttgaaggctggcctcacaataaact
gttagaaaagacaatatatctccaagttatagactacgatagatttagccgagatgatcctataggggaaacttacattc
cactcaacacgatagatctcacactagctcccacaatgtggaggtacctacagccgtgtaaggatagcagggggaagctt
ggtgagattttactgtctctgtgttaccagccagcggtcgggaggctgacggtggtggtaatgaaatgtaaagatctcaa
ggcgaaggacattacaggggcgtcagatccttacgtcaaactgtggctaatgtacggaaacacgcgggttgagaagaaaa
aaacctcaatcaaaatgaggacgttaaacccagtgtataatgaatcattcatttatgacattccttgggacaagatcagg
gaggcagccattgaggtcatagtgatggactttgataaagtaggtcgcaatgaaatgatcggcaaaattctcctcagtag
taaaagtggtcctctagaaacaagacattggaacgatatgataacgaaaccgagacaggccgtggcacagtggcatctac
tgaaggactga

Protein
Protein IDpfu_aug1.0_2759.1_66452.t1
Definition-
>pfu_aug1.0_2759.1_66452.t1
MLFSFLRFERPGRNHQVVTENVQPNLATHTSLHESLGSRSSTGSNYQTMTPSHKPLSQSNSKNSASADDVNSSLWKGMRN
IAFTLMDNADEEAMEATPIDPSEGVDCQLGRIQFAISYDFQNLTLSLKILQAQSLPAKDFTGTSDPYVKIMLLPDKKHKL
VTKVKKKNLNPRWNECFLFEGWPHNKLLEKTIYLQVIDYDRFSRDDPIGETYIPLNTIDLTLAPTMWRYLQPCKDSRGKL
GEILLSLCYQPAVGRLTVVVMKCKDLKAKDITGASDPYVKLWLMYGNTRVEKKKTSIKMRTLNPVYNESFIYDIPWDKIR
EAAIEVIVMDFDKVGRNEMIGKILLSSKSGPLETRHWNDMITKPRQAVAQWHLLKD

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