Gene
| Gene Model ID | pfu_aug1.0_2761.1_15931 |
|---|---|
| Locus | scaffold2761.1 : 3126 ... 15538 : + |
| To GenomeBrowser | scaffold2761.1:3126..15538 |
| Genes list of scaffold | scaffold2761.1 |
| Synonym | pfu_aug2.0_1469.1_31700 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2761.1_15931.t1 | 3 | 1 | RRM_6 | 8 | 63 | 4.0e-20 | 71.5 | 5.7e-08 | 0.00021 | 21.2 |
| pfu_aug1.0_2761.1_15931.t1 | 3 | 1 | RRM_5 | 12 | 63 | 1.5e-15 | 56.7 | 1.3e-08 | 4.9e-05 | 23.0 |
| pfu_aug1.0_2761.1_15931.t1 | 3 | 1 | RRM_1 | 15 | 63 | 1.2e-27 | 95.3 | 2.6e-09 | 9.5e-06 | 25.1 |
| pfu_aug1.0_2761.1_15931.t1 | 3 | 2 | RRM_1 | 95 | 161 | 1.2e-27 | 95.3 | 8.8e-18 | 3.3e-14 | 52.2 |
| pfu_aug1.0_2761.1_15931.t1 | 3 | 2 | RRM_6 | 95 | 160 | 4.0e-20 | 71.5 | 4.4e-12 | 1.6e-08 | 34.3 |
| pfu_aug1.0_2761.1_15931.t1 | 3 | 2 | RRM_5 | 109 | 162 | 1.5e-15 | 56.7 | 5.0e-08 | 0.00019 | 21.2 |
| pfu_aug1.0_2761.1_15931.t1 | 3 | 3 | RRM_6 | 174 | 237 | 4.0e-20 | 71.5 | 1.7e-05 | 0.065 | 13.2 |
| pfu_aug1.0_2761.1_15931.t1 | 3 | 3 | RRM_1 | 175 | 237 | 1.2e-27 | 95.3 | 1.6e-06 | 0.006 | 16.1 |
| pfu_aug1.0_2761.1_15931.t1 | 3 | 3 | RRM_5 | 188 | 237 | 1.5e-15 | 56.7 | 6.9e-05 | 0.26 | 11.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2761.1_15931.t1 | gi|241670456|ref|XP_002411413.1| | RNA recognition motif protein, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2761.1_15931.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2761.1_15931.t1 atgaagtataatacaagtttgagagacggcctctttcacgatttcaagaagtacggaaaaataaatgctgtgctggtaac aggacagggtgaagatcgttatgctatagtcagctatcgcaaaaccgaagatgcggaaaaagccatccacaatacacagg gcaaagttttctttggaatgaaaattcggacatcgcttactgatggaatagaagtagacgataacgaacttcgacctcct gaagccgaactagacgaacaccatccaaaagctactcgcacattgtttgtgggaaatctggaaaaagacatctccaacga agaattgagggagagattttccaaattcggaacaatcctcgacatagatgtaaaacggcagggggccatctcagcgtatg cctttgtacagtttactgacattagcagtgttgttaaagttctaagagagttagaaggagaaatctgggggtctatgaaa ctcaagctgggctttgggaagagcatgcccactacatgtgtatggttagacaatgttgaccagactgtacaggagaattt cctctgccgacagttcatgcgctacggccaagtgtcacatggtatcatagataggatacgtggacgagcgttggtcttct ttgtcaacctggagatggcacagtacgcactcaacgagatgaggaaccgcatacttaacaatcgtaaaattatcaaaagc aaccttaaaagagagtctaggcatgatttatgctgggaaatgcttgtgttaaaatatgacaacagagggagtttctacaa gttcccctaccatcaaggtcccccacagttcagggggcgtggccgaggatggggtggatccaggggtggatttaacaaag agggattctcaggagaagagtacagaagaacaaggtcttacgaggaatacggtagatatcccggaggtccaccagaaggc gactttgatcaagacttgcgtgcatatcagcgagaaagacgagaacatgggagtccgagtccctctcagtacagtgacga cccctatggtgaacgctatggaaaatatttcaagtatcctgaatcgtaccgtagtggaagtcccgttagtgaaagagctt atgaagactttgaatacggaaagccgcgccctgatgaaaaatactttaaggagcgttatccagaaatggaatttcatgat cgtcatggatactcccctgagggtcgaagttggagccggtctccgacattaggaatgccgccaaaagattcatacggacg taatacgccaccgacacctatggacgatgaaatgcacgatttctcatcacatgataatagccctgaaggagaggcaatcg gaaagtacagtgaagtgaaagagaaacgtaggaaatcaggggatgattttatgataaatgaggcagatatcgctgaaata aaccgtgcttcaaaatatcatgcgggttacaggaagggacaggaatctccgtggcgtgatgaacggtacgatagaaaaag atcttatgacgaatcattctctaatgaatttgggcagtttgaacaatctccgcacaaacttgatagacaaatcagtcgtg gaagtaaatctagcatagctgactctcgacgtgatatatgtcaaaaagtgcggaaaattgagtcgaaaattacggaaaga ttgaaaaaaggaaaagaaagtagtccaagttcaggcagtagcgagtctggtgaattaactgaaggagaattaactaagct tcagagtgagaagcagttgttgttggacaagttaaaaagtttagaaaaagattcaagtaatagtgacttggaagaaggaa tgattgaagaagaccgaaggaaaagttcgaaacgtccgagacttgaatctgaaaatccttgggaaaagtcatcgaaaaat gaacttacaaatgcgaaaggacatcctaaaaaatctgtgtcatatgactcgactttaagtttgagaaagcaaatggatca tctacgtaaaatagatgaaacaaagaaaacggaggaaaagaatagaaattatgcatcaaatgcatcaaggactagtgtgg acgcagagggaagtgaggctgaagaatttacagccatgctatcccccaaggaaatatctgcctccttcaaaaggcggaaa aagcacgaaactgctgaagaaaaacgatcatatcgattaaaacgcggcgatgaggaaatgagtagtgacaatgaggaaaa taaaaacccttcaaggacagattcattatcgtcgaatcccgttttccgtcgtatgtccagtggtcattcgtccccaagga cgcccgtagcgccacatggacacgaccctagtggtgatgttttacggcatagtgaatcggatttatctgctaatgaagga cattcttcatttacagatgattcaaagaagaaatcggagagtgcgactaaaaatcacggacatagatctaaacacagaca aaaggaagaacatcagcctacggtcatacctctaggtgatgatgagcctaattcagagttatccgatcccagaagtcgga atgtgatttctgaacaaatgtcattacctctgcctcaatttgcggaattagacttaaacgttatgatgtcaccagacgct gaaaactccgaggagagaatgaaaagtgagtcgccctgtttctctccaccgagtagtgggagtaaaaacactaactcacc gcagcgctcacctagtgagtcggtatcggcagactcgcaggagccgatacaaccagagtatattccagaggaaggcacta cgaacgaagtaccttctgaagatcaattactcggaaaaactaaggagaaaagtgattttgattcagatgatggattttca gacaatagtgatcatatggataattttgaatccgatgataaactttctttagaggaaagaataagaaggttggacgaaaa gttacgcgccgtaccgactccctctactagtacaaaaccagtgtcggacattagtgcgtctttatcaataaactcaggat caaagggtgaagcatgtaactcatccttagcaagaacagctttgtattctaaatttaggattagtaaacggcaagacgca tcaggtaacggaatagacaataaggcagaaggatctgacattacgcacactgtggtaccacggaaaattagcattttcga ccaggatgctaaaagacttgaacaaatctcggaaaaatattctccaaagacaaatttgtctagcgtggaggacacacatg tctccatgcccgttatgacaaaagctgccgtcaaggaaatgccgttagctactttaccgggttcgctgacgggtcgcctc ggcaattcagctgcgtttccaactctatctgtcaataccaccacagctaatcagacaggattaaaacctgaggaaatgtt ttctagtcccacttcagaaatctcaacccctagtccggcttttaatagctctcaggaaaaacctatatggcaaactgaaa actttactggttcaccgcatttggtagagcctgcagttactgcttactccttggtgccaaaaacaaacttcagtgaacaa ataaacaactcaggaaatttacattcgaacagcagtaaagaggatttaataagtaaaccatttgtgactccggcagttaa gaaacaaatgggattatctaaccttagtgatgctaattctgtgtttacgaacagtgttgtgcatgaggaaaaattacatt ctccaaaagaatctgagaaattatcgccaaaaggcgatgctaaatcctcacccaatagaaatgaacaaaccgtgtcacca aaactctcaccaaagccgttttcaaagatggactctaatgttaattcgtttgtagaaacaaattccagtatcaaatcaga tctgatctcggacttacatacaagtgatagtaacaaattaacaaattccatggaaaaagtcaactcacatagtgttcaat ctgtaaatgaaccaatggaggaagatacaccaagtattctatgtgatacaaaatcaaatagtgcaccaaggacgaaaaat agtgatccggatttaacgttatcaaatcacgtttcggactctcatgttaagaaaaccacagaaaataaggaaaattcatt gacgtctaaatttagtgaaagctgtgattcactcgcagattctatagtgactaaacaggatttaccatctacttcagtga cgagggatagcagtatttctaaagtcaatggaagcaaggatcataataagaaagtgaatgaaactgttgaagatgtgttg ggacttaatacgccagtgttaggaaaacgcaaagccgaactagacgaaaaacctaaaagtagcagtaaagataagagcag tagtaaagagacagttccgagtgtgaacatggcatccgagtcagaattatccgagaaggatgacaaaacacaagagccag atgtgaaaaaagtcaaactcgcgaaatccgagtcatcaagctctgaaggggagaaggtagacggcaaaaataaagtgaaa aacaaagacagccagaaaaaggacaaggagaacaagaaaaagaagcttgtgaagacgatttggttaaaaaggagaagaat aatggcgagaagaaggacaaagacagggacggtagttctagtaaaggaagtgccagcaagacttcttctggtagtggtga aaagacaggcagtagcagcaagtctagcagtaaatcccacgacaaatctcaagctgccagtaaatcgtcgtcagttaaag cagaggacaaggtcataa |
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Protein
| Protein ID | pfu_aug1.0_2761.1_15931.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2761.1_15931.t1 MKYNTSLRDGLFHDFKKYGKINAVLVTGQGEDRYAIVSYRKTEDAEKAIHNTQGKVFFGMKIRTSLTDGIEVDDNELRPP EAELDEHHPKATRTLFVGNLEKDISNEELRERFSKFGTILDIDVKRQGAISAYAFVQFTDISSVVKVLRELEGEIWGSMK LKLGFGKSMPTTCVWLDNVDQTVQENFLCRQFMRYGQVSHGIIDRIRGRALVFFVNLEMAQYALNEMRNRILNNRKIIKS NLKRESRHDLCWEMLVLKYDNRGSFYKFPYHQGPPQFRGRGRGWGGSRGGFNKEGFSGEEYRRTRSYEEYGRYPGGPPEG DFDQDLRAYQRERREHGSPSPSQYSDDPYGERYGKYFKYPESYRSGSPVSERAYEDFEYGKPRPDEKYFKERYPEMEFHD RHGYSPEGRSWSRSPTLGMPPKDSYGRNTPPTPMDDEMHDFSSHDNSPEGEAIGKYSEVKEKRRKSGDDFMINEADIAEI NRASKYHAGYRKGQESPWRDERYDRKRSYDESFSNEFGQFEQSPHKLDRQISRGSKSSIADSRRDICQKVRKIESKITER LKKGKESSPSSGSSESGELTEGELTKLQSEKQLLLDKLKSLEKDSSNSDLEEGMIEEDRRKSSKRPRLESENPWEKSSKN ELTNAKGHPKKSVSYDSTLSLRKQMDHLRKIDETKKTEEKNRNYASNASRTSVDAEGSEAEEFTAMLSPKEISASFKRRK KHETAEEKRSYRLKRGDEEMSSDNEENKNPSRTDSLSSNPVFRRMSSGHSSPRTPVAPHGHDPSGDVLRHSESDLSANEG HSSFTDDSKKKSESATKNHGHRSKHRQKEEHQPTVIPLGDDEPNSELSDPRSRNVISEQMSLPLPQFAELDLNVMMSPDA ENSEERMKSESPCFSPPSSGSKNTNSPQRSPSESVSADSQEPIQPEYIPEEGTTNEVPSEDQLLGKTKEKSDFDSDDGFS DNSDHMDNFESDDKLSLEERIRRLDEKLRAVPTPSTSTKPVSDISASLSINSGSKGEACNSSLARTALYSKFRISKRQDA SGNGIDNKAEGSDITHTVVPRKISIFDQDAKRLEQISEKYSPKTNLSSVEDTHVSMPVMTKAAVKEMPLATLPGSLTGRL GNSAAFPTLSVNTTTANQTGLKPEEMFSSPTSEISTPSPAFNSSQEKPIWQTENFTGSPHLVEPAVTAYSLVPKTNFSEQ INNSGNLHSNSSKEDLISKPFVTPAVKKQMGLSNLSDANSVFTNSVVHEEKLHSPKESEKLSPKGDAKSSPNRNEQTVSP KLSPKPFSKMDSNVNSFVETNSSIKSDLISDLHTSDSNKLTNSMEKVNSHSVQSVNEPMEEDTPSILCDTKSNSAPRTKN SDPDLTLSNHVSDSHVKKTTENKENSLTSKFSESCDSLADSIVTKQDLPSTSVTRDSSISKVNGSKDHNKKVNETVEDVL GLNTPVLGKRKAELDEKPKSSSKDKSSSKETVPSVNMASESELSEKDDKTQEPDVKKVKLAKSESSSSEGEKVDGKNKVK NKDSQKKDKENKKKKLVKTIWLKRRRIMARRRTKTGTVVLVKEVPARLLLVVVKRQAVAASLAVNPTTNLKLPVNRRQLK QRTRS |
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