Gene
| Gene Model ID | pfu_aug1.0_2761.1_15934 |
|---|---|
| Locus | scaffold2761.1 : 49086 ... 64963 : + |
| To GenomeBrowser | scaffold2761.1:49086..64963 |
| Genes list of scaffold | scaffold2761.1 |
| Synonym | pfu_aug2.0_3625.1_19157 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2761.1_15934.t1 | 2 | 1 | TIP_N | 5 | 41 | 2.6e-19 | 69.2 | 7.9e-11 | 5.9e-07 | 29.5 |
| pfu_aug1.0_2761.1_15934.t1 | 2 | 2 | TIP_N | 79 | 129 | 2.6e-19 | 69.2 | 1.5e-14 | 1.1e-10 | 41.5 |
| pfu_aug1.0_2761.1_15934.t1 | 2 | 1 | GCFC | 292 | 560 | 0.0 | 299.5 | 0.0 | 0.0 | 298.4 |
| pfu_aug1.0_2761.1_15934.t1 | 2 | 2 | GCFC | 574 | 604 | 0.0 | 299.5 | 0.022 | 170.0 | 1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2761.1_15934.t1 | gi|147903314|ref|NP_001087642.1| | tuftelin-interacting protein 11 [Xenopus laevis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2761.1_15934.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2761.1_15934.t1 atgtcgtcacctgaggtagagaagtttgaaatcacagacgatgatctcatgcgggagttcaatcccagaagtggatttcg acagacaaaaaatcaggccatatatgacatttttcatcgtgacgaacttcgcacttcaaacattgaagaactcgtggcaa agctgcctttcgcatataaactcataagcggagtaatcttcagtttgattagtatactcaatggaatggtacaaggtatg tgggccgacagcgatgatgaggatcagcgtagcggtttcgggggcggatccaggcggaagaagaagagtgacctatccat gcccgtaaactttgtcagcggaggaatcaaacaaggcgataaaatcaaaaaagaagaaaatgaagattctatactagngg gaaacaagaagaaaccaaaatatgtctacaaaacggcacaggaactgatagagtctggtactggcaagaagaaacatgtt ccgaataaatcctccaaggtcaaggtcattgatatgaccggcaaagagcagagagtgctgtcaggttaccatgccatagc aacacgacatgaccgaccagacgaggatgaagatatcatagaggaagacacgacacaaaggaaagtgttccaaatgccgg aactaatgcacaacctcaacatcttagtagatatggcagaggaagaaattatacagaatgatagaaaactgcggtatgag aaagatcacattatcaacatgaatcatgagaaattacgactcgatgaaatctgtgaccaagaggagaaacagctagataa actacgcaatgttctggaaattgtcgacagttgtgaagagcgcatgaagccaggtaacgacaatcccctcacactggatg aatgtgctggcattttcaaatctctacaggacgattattacgaggaatataagatgtacgacttgtcctctttggccgtt gccatggtgtttccaatgatgcgtcagtatttgagtcaatgggaccctctcagcgatccgcgctacggtatagacacaat taaacagtggagattcctattagaggattataacagccgttatgtacccgaccctaaaaatatggacgtgtatcagagat tactgtgggacgtatggctgccgtttgtgaggaccacagtgttgaagtggaatgtaagagcctgtgatcccctgatagaa ttaatagaagcttggaaacccgtcattccgtcatacatcaccgaaaacatcctcgaccagctcgtgttgccacggttact acaggaagtcgagaactggaatccgcttaccgacaccatgcccattcatgcatggctgcatccatggttaccactaatgg cagaaaaacttgaaccactttacgcaccaatcagacacaagctttcaagtgcactgacgaactggcacccatccgatgcc tcggcaaaggtcattctacaaccctgggtcaaggtctttaaacaaggtcatatggaagccttcttggtaaagaatatact accaaagctagccatgtgtatgggggaatttgtcatcaatcctgttcatcaagtattagaaccatggcattgggtaatgt cgtggagtgacatcataccaaccaagcacctggtggaaatgttagataaaacgttctttccaaaatggcgtacgatcctg acgacatggcttggcaacatgccaaattatgacgagatcacaaagtggtacttaggatggaagtccctcttctcagagga gtacctatcacaccctgtcatcaaagagaattttgccaaagccctggatgtgatgaatcggtcagtctctggccacatgc aacctggactaaaggagaatgtagcatatttctctcatatggaaaaacggcagatggctgattcaagttcctcgtcccgc tctccaccgcgtctccataaggaatcaaatgaacagtatgcaaggagtgcttctagtacaacatcctacacaagtagctt taaggacttgatcgagaaaaaggctgcagagttgaacatgttgtttatgccggtcataggaaaatcacaggaaggaaaac aagtgtacagattcggacaattactgatgtattttgacaggaatgtggtttttatgcaacaatcagactcattatgggtt cctgtgtccatacagacgttagtggataaagcttctgcaagtcagggttatcccccttga |
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Protein
| Protein ID | pfu_aug1.0_2761.1_15934.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2761.1_15934.t1 MSSPEVEKFEITDDDLMREFNPRSGFRQTKNQAIYDIFHRDELRTSNIEELVAKLPFAYKLISGVIFSLISILNGMVQGM WADSDDEDQRSGFGGGSRRKKKSDLSMPVNFVSGGIKQGDKIKKEENEDSILXGNKKKPKYVYKTAQELIESGTGKKKHV PNKSSKVKVIDMTGKEQRVLSGYHAIATRHDRPDEDEDIIEEDTTQRKVFQMPELMHNLNILVDMAEEEIIQNDRKLRYE KDHIINMNHEKLRLDEICDQEEKQLDKLRNVLEIVDSCEERMKPGNDNPLTLDECAGIFKSLQDDYYEEYKMYDLSSLAV AMVFPMMRQYLSQWDPLSDPRYGIDTIKQWRFLLEDYNSRYVPDPKNMDVYQRLLWDVWLPFVRTTVLKWNVRACDPLIE LIEAWKPVIPSYITENILDQLVLPRLLQEVENWNPLTDTMPIHAWLHPWLPLMAEKLEPLYAPIRHKLSSALTNWHPSDA SAKVILQPWVKVFKQGHMEAFLVKNILPKLAMCMGEFVINPVHQVLEPWHWVMSWSDIIPTKHLVEMLDKTFFPKWRTIL TTWLGNMPNYDEITKWYLGWKSLFSEEYLSHPVIKENFAKALDVMNRSVSGHMQPGLKENVAYFSHMEKRQMADSSSSSR SPPRLHKESNEQYARSASSTTSYTSSFKDLIEKKAAELNMLFMPVIGKSQEGKQVYRFGQLLMYFDRNVVFMQQSDSLWV PVSIQTLVDKASASQGYPP |
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