Gene
Gene Model ID | pfu_aug1.0_277.1_07463 |
---|---|
Locus | scaffold277.1 : 62985 ... 76895 : - |
To GenomeBrowser | scaffold277.1:62985..76895 |
Genes list of scaffold | scaffold277.1 |
Synonym | pfu_aug2.0_9582.1_09723 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | N14(N16)A |
Description | NCBI BLASTN best hit to AB023248~AB023254,AB023067 |
mRNA evidence |
Study field | Biomineralization |
---|---|
Gene name | N14(16)A |
Description | reciprocal BLASTN best hit to NCBI Accession AB023248~AB023254,AB023067(Pinctada fucata).7454~7708bp in this model corresponded to exon2 of N14(16). |
mRNA evidence |
Study field | Biomineralization |
---|---|
Gene name | pearlin |
Description | NCBI Blastp search "O97048.1" |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_277.1_07463.t1 | gi|74765013|sp|O97048.1|MA165_PINFU | N16.5 matrix protein [Pinctada fucata] | 4.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 5 |
>Adult tissues | |
mantle | 4 |
mantleEdge | 2 |
mantlePallium | 2 |
pearlSac | 2 |
Transcript
Transcript ID | pfu_aug1.0_277.1_07463.t1 |
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Definition | - |
>pfu_aug1.0_277.1_07463.t1 atgcactatccaaacctcttaagagaagccaggccccgaccaactgccctctctgaatctcagtcggactcattggcttt ccatacgaagtgcggacgttactcatactgctggataccctacgacatagagagagacagatatgacaacggtgataaga aatgttgtttctgtagaaacgcttggtctccatggcaatgtagaaaggacgaaaggtatgagtggctaagatgtggacat aaattctactacatgtgttgttacaccgatgatgacaacggtaacggaaatggcaacggtaacggatttaattacctcaa gtctttatatggtttccagaactactag |
Protein
Protein ID | pfu_aug1.0_277.1_07463.t1 |
---|---|
Definition | - |
>pfu_aug1.0_277.1_07463.t1 MHYPNLLREARPRPTALSESQSDSLAFHTKCGRYSYCWIPYDIERDRYDNGDKKCCFCRNAWSPWQCRKDERYEWLRCGH KFYYMCCYTDDDNGNGNGNGNGFNYLKSLYGFQNY |