Gene
| Gene Model ID | pfu_aug1.0_277.1_07463 |
|---|---|
| Locus | scaffold277.1 : 62985 ... 76895 : - |
| To GenomeBrowser | scaffold277.1:62985..76895 |
| Genes list of scaffold | scaffold277.1 |
| Synonym | pfu_aug2.0_9582.1_09723 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | N14(N16)A |
| Description | NCBI BLASTN best hit to AB023248~AB023254,AB023067 |
| mRNA evidence |
| Study field | Biomineralization |
|---|---|
| Gene name | N14(16)A |
| Description | reciprocal BLASTN best hit to NCBI Accession AB023248~AB023254,AB023067(Pinctada fucata).7454~7708bp in this model corresponded to exon2 of N14(16). |
| mRNA evidence |
| Study field | Biomineralization |
|---|---|
| Gene name | pearlin |
| Description | NCBI Blastp search "O97048.1" |
| mRNA evidence |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_277.1_07463.t1 | gi|74765013|sp|O97048.1|MA165_PINFU | N16.5 matrix protein [Pinctada fucata] | 4.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 5 |
| >Adult tissues | |
| mantle | 4 |
| mantleEdge | 2 |
| mantlePallium | 2 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_277.1_07463.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_277.1_07463.t1 atgcactatccaaacctcttaagagaagccaggccccgaccaactgccctctctgaatctcagtcggactcattggcttt ccatacgaagtgcggacgttactcatactgctggataccctacgacatagagagagacagatatgacaacggtgataaga aatgttgtttctgtagaaacgcttggtctccatggcaatgtagaaaggacgaaaggtatgagtggctaagatgtggacat aaattctactacatgtgttgttacaccgatgatgacaacggtaacggaaatggcaacggtaacggatttaattacctcaa gtctttatatggtttccagaactactag |
|
Protein
| Protein ID | pfu_aug1.0_277.1_07463.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_277.1_07463.t1 MHYPNLLREARPRPTALSESQSDSLAFHTKCGRYSYCWIPYDIERDRYDNGDKKCCFCRNAWSPWQCRKDERYEWLRCGH KFYYMCCYTDDDNGNGNGNGNGFNYLKSLYGFQNY |
|