Gene
| Gene Model ID | pfu_aug1.0_2813.1_59038 |
|---|---|
| Locus | scaffold2813.1 : 35399 ... 44535 : - |
| To GenomeBrowser | scaffold2813.1:35399..44535 |
| Genes list of scaffold | scaffold2813.1 |
| Synonym | pfu_aug2.0_2015.1_18645 |
Manual annotation
| Study field | Metabolism |
|---|---|
| Gene name | lab 7 |
| Description | reciprocal BLASTP best hit to NCBI Accession JC8006 gap |
| mRNA evidence |
| Study field | Biomineralization |
|---|---|
| Gene name | Pf-Rab7-like protein |
| Description | Gene model 44535-44102 (Exon 1, Transcript 1-403): BLASTN best hit to Rab7-like protein cDNA 37-442 (Pinctada fucata, NCBI Accession FJ809935), and reciprocal BLASTP best hit to Rab7-like protein 1-145 (Pinctada fucata, NCBI Accession AC040522.1).Gene model 38552-38425 (Exon 3): BLASTN best hit to Rab7- like protein cDNA 89-219(FJ809935), and 38178-37954 (Exon 4) BLASTN best hit to Rab7-like protein cDNA 218-442 (FJ809935). Probable presence of splicing variants.Gene model 36545-35403: BLASTN best hit to Rab7-like protein cDNA 964-2107 (FJ809935).3'terminal sequence 2131-2515 of Rab7-like protein cDNA(FJ809935): BLASTN best hit to scaffold 188690.1. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2813.1_59038.t1 | 1 | 1 | Arf | 8 | 138 | 2.9e-13 | 49.4 | 5.9e-16 | 3.4e-13 | 49.2 |
| pfu_aug1.0_2813.1_59038.t1 | 1 | 1 | Ras | 10 | 141 | 0.0 | 157.3 | 0.0 | 0.0 | 157.1 |
| pfu_aug1.0_2813.1_59038.t1 | 1 | 1 | Miro | 10 | 128 | 3.3e-19 | 69.5 | 7.1e-22 | 4.0e-19 | 69.2 |
| pfu_aug1.0_2813.1_59038.t1 | 1 | 1 | MMR_HSR1 | 10 | 95 | 2.8e-07 | 30.4 | 6.2e-10 | 3.5e-07 | 30.1 |
| pfu_aug1.0_2813.1_59038.t1 | 1 | 1 | Gtr1_RagA | 10 | 129 | 1.2e-06 | 27.8 | 2.4e-09 | 1.4e-06 | 27.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2813.1_59038.t1 | gi|60729663|pir||JC8006 | Rab7 protein - sea anemone (Aiptasia pulchella) | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2813.1_59038.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2813.1_59038.t1 atggcttcgaggaagaaggttttgttgaaagtaataatattaggtgacagtggtgtaggtaagacatcacttatgaacca gtatgtgaacaaaaagttcagtaatcaatataaggccaccattggagcagatttccttaccaaagaagtcatggtagaag ataggctagtcactatgcagatatgggacacagcgggccaggagaggtttcagagtttaggcgtggctttctacaggggt gcagactgttgtgtattggtgtttgatgttaccatgccaaatacattcaaatcactagacagctggagagatgagtttct tatacaagcaagtccaagggatccagaaaactttccttttgttgttataggaaataaaatagatttggaaaacagggcgg taagtacaaaagtaggaaatactagtcaatttggctgtaatgtttatctgaaaaatctgtaa |
|
Protein
| Protein ID | pfu_aug1.0_2813.1_59038.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2813.1_59038.t1 MASRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVEDRLVTMQIWDTAGQERFQSLGVAFYRG ADCCVLVFDVTMPNTFKSLDSWRDEFLIQASPRDPENFPFVVIGNKIDLENRAVSTKVGNTSQFGCNVYLKNL |
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