Gene
Gene Model ID | pfu_aug1.0_2817.1_30257 |
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Locus | scaffold2817.1 : 47694 ... 54325 : - |
To GenomeBrowser | scaffold2817.1:47694..54325 |
Genes list of scaffold | scaffold2817.1 |
Synonym | NA |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | gastrulation brain homeobox |
Description | It is the best hit to XM_002609023.1 Branchiostoma floridae nk homeobox 7 (Tlx), mRNA |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_2817.1_30257.t1 | 1 | 1 | Homeobox | 145 | 201 | 1.6e-21 | 75.6 | 2.0e-25 | 3.0e-21 | 74.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_2817.1_30257.t1 | gi|260828235|ref|XP_002609069.1| | nk homeobox 7 [Branchiostoma floridae] | 7.0e-36 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_2817.1_30257.t1 |
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Definition | - |
>pfu_aug1.0_2817.1_30257.t1 atggattatgaagcaggtcacagaggatttgcatttctatcccgagggtatgcgtccatgacttcacagctctacaccac cccaaggacgtggcacccccataaatacgacaaacctcccatgcggccaacgcccttcttcatctccaatatcctaggta cttccgacgtgaacggtccttcagctaaagctgactatgaagaaattggaagtttagactttgacaatagaaacagttca aactttaaatctgaggaaagtttaaaggaacaatgtaagtgtgggggctgcttgactgcaatcaaagacaacgatcgacg aacaccaccatcctccatcagcaatgattcaagatccaatgattcatgttccacggacaagcgaaaaatttctgagaacg aagatgcttcaccggaacaacccgcgaaaaagaaaaaggcaagaaccacgtttacgggccgacaaattttcgaattggag aaacaatttgaacagaagaaatatctatcatctgcggagagagcggaaatggcgacattgctcaatgtcacagaaactca ggtgaagatttggttccaaaaccgaagaacgaaatggaaaaagcaggaaaatatttctaacgcagaagctgcagaacaca aactgaatattgagaaaagcacgaatccgcaaaaatccgggcagatcaatgttccgttgacaggcaaatgtgattcgagt aacagggaaggcacaactatcaaaaatgagtatttaaccgtttatgaaacaacagaaaactgtgttcccagtgtaccatg tgaaatcatgacaccttcggtaaatgtaaaaacagaggaagacataaaaacgacgaaagatgacgtcacaccggaagaac agtttttcgcagatgacatttcggcacaagacaacgtggacgataaccaatctcagagtaaagaggtcatagaacccgaa aaaatgttctcaaatgatgtgatgtga |
Protein
Protein ID | pfu_aug1.0_2817.1_30257.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2817.1_30257.t1 MDYEAGHRGFAFLSRGYASMTSQLYTTPRTWHPHKYDKPPMRPTPFFISNILGTSDVNGPSAKADYEEIGSLDFDNRNSS NFKSEESLKEQCKCGGCLTAIKDNDRRTPPSSISNDSRSNDSCSTDKRKISENEDASPEQPAKKKKARTTFTGRQIFELE KQFEQKKYLSSAERAEMATLLNVTETQVKIWFQNRRTKWKKQENISNAEAAEHKLNIEKSTNPQKSGQINVPLTGKCDSS NREGTTIKNEYLTVYETTENCVPSVPCEIMTPSVNVKTEEDIKTTKDDVTPEEQFFADDISAQDNVDDNQSQSKEVIEPE KMFSNDVM |