Gene
| Gene Model ID | pfu_aug1.0_2817.1_30257 |
|---|---|
| Locus | scaffold2817.1 : 47694 ... 54325 : - |
| To GenomeBrowser | scaffold2817.1:47694..54325 |
| Genes list of scaffold | scaffold2817.1 |
| Synonym | NA |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | gastrulation brain homeobox |
| Description | It is the best hit to XM_002609023.1 Branchiostoma floridae nk homeobox 7 (Tlx), mRNA |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2817.1_30257.t1 | 1 | 1 | Homeobox | 145 | 201 | 1.6e-21 | 75.6 | 2.0e-25 | 3.0e-21 | 74.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2817.1_30257.t1 | gi|260828235|ref|XP_002609069.1| | nk homeobox 7 [Branchiostoma floridae] | 7.0e-36 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2817.1_30257.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2817.1_30257.t1 atggattatgaagcaggtcacagaggatttgcatttctatcccgagggtatgcgtccatgacttcacagctctacaccac cccaaggacgtggcacccccataaatacgacaaacctcccatgcggccaacgcccttcttcatctccaatatcctaggta cttccgacgtgaacggtccttcagctaaagctgactatgaagaaattggaagtttagactttgacaatagaaacagttca aactttaaatctgaggaaagtttaaaggaacaatgtaagtgtgggggctgcttgactgcaatcaaagacaacgatcgacg aacaccaccatcctccatcagcaatgattcaagatccaatgattcatgttccacggacaagcgaaaaatttctgagaacg aagatgcttcaccggaacaacccgcgaaaaagaaaaaggcaagaaccacgtttacgggccgacaaattttcgaattggag aaacaatttgaacagaagaaatatctatcatctgcggagagagcggaaatggcgacattgctcaatgtcacagaaactca ggtgaagatttggttccaaaaccgaagaacgaaatggaaaaagcaggaaaatatttctaacgcagaagctgcagaacaca aactgaatattgagaaaagcacgaatccgcaaaaatccgggcagatcaatgttccgttgacaggcaaatgtgattcgagt aacagggaaggcacaactatcaaaaatgagtatttaaccgtttatgaaacaacagaaaactgtgttcccagtgtaccatg tgaaatcatgacaccttcggtaaatgtaaaaacagaggaagacataaaaacgacgaaagatgacgtcacaccggaagaac agtttttcgcagatgacatttcggcacaagacaacgtggacgataaccaatctcagagtaaagaggtcatagaacccgaa aaaatgttctcaaatgatgtgatgtga |
|
Protein
| Protein ID | pfu_aug1.0_2817.1_30257.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2817.1_30257.t1 MDYEAGHRGFAFLSRGYASMTSQLYTTPRTWHPHKYDKPPMRPTPFFISNILGTSDVNGPSAKADYEEIGSLDFDNRNSS NFKSEESLKEQCKCGGCLTAIKDNDRRTPPSSISNDSRSNDSCSTDKRKISENEDASPEQPAKKKKARTTFTGRQIFELE KQFEQKKYLSSAERAEMATLLNVTETQVKIWFQNRRTKWKKQENISNAEAAEHKLNIEKSTNPQKSGQINVPLTGKCDSS NREGTTIKNEYLTVYETTENCVPSVPCEIMTPSVNVKTEEDIKTTKDDVTPEEQFFADDISAQDNVDDNQSQSKEVIEPE KMFSNDVM |
|