Gene
| Gene Model ID | pfu_aug1.0_28350.1_62525 |
|---|---|
| Locus | scaffold28350.1 : 4126 ... 20548 : + |
| To GenomeBrowser | scaffold28350.1:4126..20548 |
| Genes list of scaffold | scaffold28350.1 |
| Synonym | pfu_aug2.0_1211.1_04888 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_28350.1_62525.t1 | 2 | 1 | Sulfate_transp | 6 | 38 | 9.9e-12 | 44.4 | 2.2e-10 | 3.2e-06 | 26.3 |
| pfu_aug1.0_28350.1_62525.t1 | 2 | 2 | Sulfate_transp | 63 | 147 | 9.9e-12 | 44.4 | 2.0e-07 | 0.0029 | 16.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_28350.1_62525.t1 | gi|260824365|ref|XP_002607138.1| | hypothetical protein BRAFLDRAFT_68068 [Branchiostoma floridae] | 1.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_28350.1_62525.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_28350.1_62525.t1 atgctagcttgaatactagtgaatttcatatcatatcctgtgatcaatgcctttacatcagctgcagctattacaatagc atttggacaagtcaagaaaatacgtcagattaaatggaaagatgaagaaaattcggatccaactacatgtacaaaaatag ctcgatatattgtctggctgtctggtacagctgccaatgctatagttgtaatatcagcggccggtgtagctgcagctttt atcagtgagggtaaaaacgacacactcacaatcacaggaaatctcaaatcaggtgtacccccattcaaacccccagattt ctctcttcatgatggaaatacaacttatacagctggcaatatattgtctagtatgggctcagggcttggtattgtaccac tgttaggccttgtagagcttattgctataggaaaagcttttg |
|
Protein
| Protein ID | pfu_aug1.0_28350.1_62525.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_28350.1_62525.t1 MLAXILVNFISYPVINAFTSAAAITIAFGQVKKIRQIKWKDEENSDPTTCTKIARYIVWLSGTAANAIVVISAAGVAAAF ISEGKNDTLTITGNLKSGVPPFKPPDFSLHDGNTTYTAGNILSSMGSGLGIVPLLGLVELIAIGKAF |
|