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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_2848.1_37420
Locus scaffold2848.1 : 566 ... 6497 : +
To GenomeBrowser scaffold2848.1:566..6497
Genes list of scaffold scaffold2848.1
Synonym pfu_aug2.0_620.1_00964

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_2848.1_37420.t1 1 1 VWA 1 135 1.0e-24 87.2 2.3e-28 1.2e-24 87.0
pfu_aug1.0_2848.1_37420.t1 1 1 VWA_2 2 136 1.0e-12 48.5 2.3e-16 1.1e-12 48.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_2848.1_37420.t1 gi|74205761|dbj|BAE23197.1| unnamed protein product [Mus musculus] 8.0e-13

Transcript
Transcript IDpfu_aug1.0_2848.1_37420.t1
Definition-
>pfu_aug1.0_2848.1_37420.t1
atgatcacatttggtgaccgcgctgagatagagttccacttaaatgaatatagaaaggagaaaaaactattcgaagccat
tgacaacgtaacttgtaaaggtggatcaacgtacactgctgccgctttgtcaagagcacgaaatgaattgttcaaagttc
aaaatggagaccgacctgaagtgcgaaacgtaatagttcttatcacagacggtgtctcaaatgtgaactccacattaacc
ctattggaagcagagaggacgaagaaagagaacatcaaaatatatacaatagcagtacgtgacgattattttgccttgga
atttcttcaaattgcatcaaaaccaccttcagagtttgcataccctgtctcaaaacctgaagatttggaaaacatcgcaa
gcaaaatatatgcttcagtatgtcgcagaaatggttag

Protein
Protein IDpfu_aug1.0_2848.1_37420.t1
Definition-
>pfu_aug1.0_2848.1_37420.t1
MITFGDRAEIEFHLNEYRKEKKLFEAIDNVTCKGGSTYTAAALSRARNELFKVQNGDRPEVRNVIVLITDGVSNVNSTLT
LLEAERTKKENIKIYTIAVRDDYFALEFLQIASKPPSEFAYPVSKPEDLENIASKIYASVCRRNG

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