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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_2849.1_51817
Locus scaffold2849.1 : 1 ... 13169 : +
To GenomeBrowser scaffold2849.1:1..13169
Genes list of scaffold scaffold2849.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_2849.1_51817.t1 8 1 HEAT_EZ 21 64 1.3e-16 60.5 0.095 140.0 3.1
pfu_aug1.0_2849.1_51817.t1 2 1 CLASP_N 38 72 4.7e-08 32.6 0.0036 5.4 6.3
pfu_aug1.0_2849.1_51817.t1 4 1 Vac14_Fab1_bd 40 100 2.1e-06 27.9 0.22 320.0 1.7
pfu_aug1.0_2849.1_51817.t1 8 1 HEAT 53 64 8.5e-23 78.3 0.085 130.0 3.1
pfu_aug1.0_2849.1_51817.t1 6 1 HEAT_2 54 100 2.5e-20 72.5 0.0076 11.0 6.3
pfu_aug1.0_2849.1_51817.t1 3 1 Cnd1 54 145 2.0e-06 27.7 0.012 17.0 5.1
pfu_aug1.0_2849.1_51817.t1 8 2 HEAT_EZ 65 112 1.3e-16 60.5 0.00021 0.31 11.5
pfu_aug1.0_2849.1_51817.t1 3 1 Adaptin_N 79 182 5.4e-11 41.4 2.9e-05 0.044 12.1
pfu_aug1.0_2849.1_51817.t1 8 2 HEAT 85 120 8.5e-23 78.3 0.025 36.0 4.7
pfu_aug1.0_2849.1_51817.t1 6 2 HEAT_2 99 191 2.5e-20 72.5 9.9e-09 1.5e-05 25.2
pfu_aug1.0_2849.1_51817.t1 8 3 HEAT_EZ 104 153 1.3e-16 60.5 6.4e-05 0.095 13.2
pfu_aug1.0_2849.1_51817.t1 6 3 HEAT_2 132 231 2.5e-20 72.5 1.3e-08 2.0e-05 24.7
pfu_aug1.0_2849.1_51817.t1 8 3 HEAT 141 158 8.5e-23 78.3 0.015 22.0 5.4
pfu_aug1.0_2849.1_51817.t1 8 4 HEAT_EZ 162 191 1.3e-16 60.5 0.047 70.0 4.1
pfu_aug1.0_2849.1_51817.t1 6 4 HEAT_2 169 270 2.5e-20 72.5 7.9e-06 0.012 15.9
pfu_aug1.0_2849.1_51817.t1 8 5 HEAT_EZ 184 231 1.3e-16 60.5 0.017 26.0 5.4
pfu_aug1.0_2849.1_51817.t1 8 4 HEAT 208 233 8.5e-23 78.3 0.047 70.0 3.9
pfu_aug1.0_2849.1_51817.t1 8 6 HEAT_EZ 224 283 1.3e-16 60.5 0.0013 2.0 9.0
pfu_aug1.0_2849.1_51817.t1 4 2 Vac14_Fab1_bd 224 267 2.1e-06 27.9 5.3e-05 0.078 13.3
pfu_aug1.0_2849.1_51817.t1 3 2 Cnd1 227 281 2.0e-06 27.7 0.0052 7.7 6.3
pfu_aug1.0_2849.1_51817.t1 2 2 CLASP_N 235 401 4.7e-08 32.6 3.2e-07 0.00048 19.5
pfu_aug1.0_2849.1_51817.t1 8 5 HEAT 250 270 8.5e-23 78.3 0.00051 0.75 10.0
pfu_aug1.0_2849.1_51817.t1 3 2 Adaptin_N 263 325 5.4e-11 41.4 1.9e-06 0.0029 16.0
pfu_aug1.0_2849.1_51817.t1 6 5 HEAT_2 264 300 2.5e-20 72.5 0.0043 6.4 7.1
pfu_aug1.0_2849.1_51817.t1 8 6 HEAT 265 288 8.5e-23 78.3 0.00024 0.35 11.0
pfu_aug1.0_2849.1_51817.t1 4 3 Vac14_Fab1_bd 292 330 2.1e-06 27.9 0.11 160.0 2.7
pfu_aug1.0_2849.1_51817.t1 8 7 HEAT_EZ 293 325 1.3e-16 60.5 0.0066 9.8 6.8
pfu_aug1.0_2849.1_51817.t1 6 6 HEAT_2 297 421 2.5e-20 72.5 2.1e-10 3.0e-07 30.6
pfu_aug1.0_2849.1_51817.t1 8 7 HEAT 299 326 8.5e-23 78.3 1.7e-07 0.00026 20.8
pfu_aug1.0_2849.1_51817.t1 4 4 Vac14_Fab1_bd 353 406 2.1e-06 27.9 0.055 81.0 3.6
pfu_aug1.0_2849.1_51817.t1 3 3 Adaptin_N 355 411 5.4e-11 41.4 0.0002 0.3 9.3
pfu_aug1.0_2849.1_51817.t1 3 3 Cnd1 360 409 2.0e-06 27.7 0.00055 0.82 9.4
pfu_aug1.0_2849.1_51817.t1 8 8 HEAT 362 388 8.5e-23 78.3 3.9e-06 0.0057 16.6
pfu_aug1.0_2849.1_51817.t1 8 8 HEAT_EZ 375 418 1.3e-16 60.5 4.6e-05 0.068 13.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_2849.1_51817.t1 gi|224071966|ref|XP_002196360.1| PREDICTED: translational activator GCN1 [Taeniopygia guttata] 0.0

Transcript
Transcript IDpfu_aug1.0_2849.1_51817.t1
Definition-
>pfu_aug1.0_2849.1_51817.t1
atcccgcctcctgtcctggattcttttggccgtccggtaggagacgaggccccagaccagtggcctgctcgtagtggtat
agctttagcactggagaatatcagtcctctcctctcggcccagcagatagctgacttgtttaaattctatgttcctaaag
ccctgggcgacagatcaccggaggtcaggactaggatgagagaggccgcactgaaagctataaataaccatggacaggag
aatgtgaacattctgttgccggtatttgaggatttcctgagcagtgcaccagacacagcaagctatgatgctgtacggca
gagtatagttatcttgatgggctccctggctaagcatcttgacaaggatgatccaaaagtcaaacctattgtggcacaac
tgattggagctcttagtacaccatcacaggaggttcaggaagctgtagctaactgtttacctcccctcgtccccggtatt
aagcagaatgccccagagctggtacagaaactgatgcagctattactggaggccgagaattacggagagagacgaggtgc
tgcatacgggctagcaggtctggtgagagggcttggtatcactgcgcttaaacaactggagattatgtcaacactggaac
aagctgtcaaagacaagaaaaatcctaggagaagagaaggtgccctttttgcatacgagatgctgtgtaccatgctgggt
aaactgtttgagccatatgttgtccacattctaccacacctacttctctgctttggagacaatagtcagtatgtcagaca
ggcgttagcagatgagtctgagtatgtgagggacacagccctgaaagctggacagaggatcattaacatgtacgctgata
ctgccatagaactcctactgccagaactagaaaacgggctgtttgatgataactggaggattaggtacagctcagttcaa
ctacttggggatctactgtacaagatctcgggtgtgacaggtaaaatgaccacagagactgcccatgatgatgataactt
tggtactgagtcctcacagaaggtgtcagtgtttgcagacagtttgattcctacggtacgacgagctttgattgacccgt
tacctgaggttaggaaagcagcagctcaaaccttcgacaacttacacgctaacatcagtcagagagccctggatgaaata
ctgcctgatttacttgacaaactggatgacccagttttatcagaagcagctctagatggactgaagcaggtcatgatggt
caagtccagggtagtgttacnttaccttatctcataccacagctga

Protein
Protein IDpfu_aug1.0_2849.1_51817.t1
Definition-
>pfu_aug1.0_2849.1_51817.t1
IPPPVLDSFGRPVGDEAPDQWPARSGIALALENISPLLSAQQIADLFKFYVPKALGDRSPEVRTRMREAALKAINNHGQE
NVNILLPVFEDFLSSAPDTASYDAVRQSIVILMGSLAKHLDKDDPKVKPIVAQLIGALSTPSQEVQEAVANCLPPLVPGI
KQNAPELVQKLMQLLLEAENYGERRGAAYGLAGLVRGLGITALKQLEIMSTLEQAVKDKKNPRRREGALFAYEMLCTMLG
KLFEPYVVHILPHLLLCFGDNSQYVRQALADESEYVRDTALKAGQRIINMYADTAIELLLPELENGLFDDNWRIRYSSVQ
LLGDLLYKISGVTGKMTTETAHDDDNFGTESSQKVSVFADSLIPTVRRALIDPLPEVRKAAAQTFDNLHANISQRALDEI
LPDLLDKLDDPVLSEAALDGLKQVMMVKSRVVLXYLISYHS

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