Gene
| Gene Model ID | pfu_aug1.0_2856.1_30262 |
|---|---|
| Locus | scaffold2856.1 : 10841 ... 20985 : - |
| To GenomeBrowser | scaffold2856.1:10841..20985 |
| Genes list of scaffold | scaffold2856.1 |
| Synonym | pfu_aug2.0_586.1_20936 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2856.1_30262.t1 | 2 | 1 | zf-rbx1 | 110 | 133 | 1.2e-06 | 28.5 | 0.019 | 22.0 | 5.2 |
| pfu_aug1.0_2856.1_30262.t1 | 2 | 1 | zf-C3HC4_3 | 119 | 129 | 1.7e-06 | 27.5 | 0.044 | 50.0 | 3.6 |
| pfu_aug1.0_2856.1_30262.t1 | 2 | 1 | zf-C3HC4_2 | 121 | 129 | 8.6e-06 | 25.6 | 0.043 | 49.0 | 4.0 |
| pfu_aug1.0_2856.1_30262.t1 | 2 | 1 | zf-RING_5 | 122 | 129 | 3.0e-07 | 30.0 | 0.15 | 170.0 | 2.0 |
| pfu_aug1.0_2856.1_30262.t1 | 2 | 1 | zf-RING_2 | 125 | 133 | 1.0e-09 | 38.0 | 0.012 | 14.0 | 5.6 |
| pfu_aug1.0_2856.1_30262.t1 | 2 | 2 | zf-RING_5 | 197 | 236 | 3.0e-07 | 30.0 | 1.1e-09 | 1.3e-06 | 28.0 |
| pfu_aug1.0_2856.1_30262.t1 | 2 | 2 | zf-rbx1 | 198 | 235 | 1.2e-06 | 28.5 | 1.7e-07 | 0.00019 | 21.4 |
| pfu_aug1.0_2856.1_30262.t1 | 2 | 2 | zf-C3HC4_3 | 198 | 239 | 1.7e-06 | 27.5 | 6.5e-08 | 7.4e-05 | 22.3 |
| pfu_aug1.0_2856.1_30262.t1 | 2 | 2 | zf-RING_2 | 199 | 235 | 1.0e-09 | 38.0 | 1.1e-10 | 1.3e-07 | 31.3 |
| pfu_aug1.0_2856.1_30262.t1 | 2 | 2 | zf-C3HC4_2 | 200 | 234 | 8.6e-06 | 25.6 | 2.7e-07 | 0.00031 | 20.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2856.1_30262.t1 | gi|327274398|ref|XP_003221964.1| | PREDICTED: RING finger protein 32 [Anolis carolinensis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2856.1_30262.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2856.1_30262.t1 atgtgccggagggagcagtatcaaaccagagtgatatatgagggatcaaagcaacacagaataagatgtgctacaatcat tcaggcaacatggagaatgtatgttgtaagaagttggtacctaaagctgcgggaatcagtgccacctagtgatccaaaac tacggaaaaagtactacgctgataagctatcaagtatcacagatagaatagtgaagtcatgtgattttaacatagacgtg tttctgacggagattgaccagaatatagaagccagtaggaatgttttcagggattttgatgccgtatttcaaattatgag tgatacccagtgggatgaagtacagctaaaggctgtacagagaggaaattctgagtgtcctatctgcctaggtgctctag gttcccacagctatatcgatagtagaacttccattcccaaaacccaaaccgtacaagatctctaccactccttgtcaaaa ccaacggaaaaaccggctagcagtggatctgcgagagcgagtcaaagtcaaaacacaagatccaaaaatcacagtacaaa tgccagtcacacggaaacaagtggatcatccaaagccagaaagacggtgctattatcctgttctcacgtatttcatgacg tatgtttacagacgtttgaagatctgacattgtctgagggtagaccacaatgccctgtgtgtagatctgcttatcagaaa aagatcattgcttactag |
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Protein
| Protein ID | pfu_aug1.0_2856.1_30262.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2856.1_30262.t1 MCRREQYQTRVIYEGSKQHRIRCATIIQATWRMYVVRSWYLKLRESVPPSDPKLRKKYYADKLSSITDRIVKSCDFNIDV FLTEIDQNIEASRNVFRDFDAVFQIMSDTQWDEVQLKAVQRGNSECPICLGALGSHSYIDSRTSIPKTQTVQDLYHSLSK PTEKPASSGSARASQSQNTRSKNHSTNASHTETSGSSKARKTVLLSCSHVFHDVCLQTFEDLTLSEGRPQCPVCRSAYQK KIIAY |
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