Gene
| Gene Model ID | pfu_aug1.0_28617.1_26433 |
|---|---|
| Locus | scaffold28617.1 : 1 ... 4418 : + |
| To GenomeBrowser | scaffold28617.1:1..4418 |
| Genes list of scaffold | scaffold28617.1 |
| Synonym | NA |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | PAX6_like |
| Description | BLAST hits to GU224214.1 and simple NJ tree also showed an affinity to pax6. (human) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_28617.1_26433.t1 | 1 | 1 | Homeobox | 142 | 198 | 2.4e-24 | 84.7 | 1.6e-27 | 5.8e-24 | 83.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_28617.1_26433.t1 | gi|195012799|ref|XP_001983749.1| | GH16064 [Drosophila grimshawi] | 2.0e-30 |
Transcript
| Transcript ID | pfu_aug1.0_28617.1_26433.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_28617.1_26433.t1 aaccatatcggggataagcttaaaattgaatgcgattgtcataaactgtacgtggtattttcaatttcaggcatatgtac acagtgcaatcttcccagtgtaagctctatcaacaggattctacgtaatagggcggcagacagagcagccatagcatacg cccgtatagtagaacattccttcttgccgatgccctaccctcctcccgtgtggcaatccccactgtaccctataaatgaa cccttatacattccatctacatctcaaagaccgataggacctagtccagaaaagatagagacagataaaagagaggatac taccaaagaaagaacgtcattaccagaatctacggaacaggaagtggttactgcagacgattcagacaccgaaacagacg acagtttttccagccagaaactaagacggaatagaactacattcacatctgaacaactcgacattcttgagcgagagttc gaaaaaactcattatccgggcattaacacgagggaggaattggcgacaaaaaccaaactttcagaggcaagagtgcaggt atggttttcaaacagaagagcaaagtggcgaaggacccagcgattttcgtttcttcacaacacgaccagggctcttttct ccgcctattcgcccaactcgctcgtgacgtcactggatagagaccatagtaccatactagacaggagagtgggcgtggag gacagtccgtatgataccaagtctaagtctgtacccagcatgggtagtgaacattcagcttttgatagaatatcgagtcc tggggacacagattcggaaaacgtagacaaagaataa |
|
Protein
| Protein ID | pfu_aug1.0_28617.1_26433.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_28617.1_26433.t1 NHIGDKLKIECDCHKLYVVFSISGICTQCNLPSVSSINRILRNRAADRAAIAYARIVEHSFLPMPYPPPVWQSPLYPINE PLYIPSTSQRPIGPSPEKIETDKREDTTKERTSLPESTEQEVVTADDSDTETDDSFSSQKLRRNRTTFTSEQLDILEREF EKTHYPGINTREELATKTKLSEARVQVWFSNRRAKWRRTQRFSFLHNTTRALFSAYSPNSLVTSLDRDHSTILDRRVGVE DSPYDTKSKSVPSMGSEHSAFDRISSPGDTDSENVDKE |
|