Gene
| Gene Model ID | pfu_aug1.0_28818.1_26438 |
|---|---|
| Locus | scaffold28818.1 : 37 ... 7383 : - |
| To GenomeBrowser | scaffold28818.1:37..7383 |
| Genes list of scaffold | scaffold28818.1 |
| Synonym | pfu_aug2.0_3.1_10060 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_28818.1_26438.t1 | 4 | 1 | LRR_8 | 83 | 116 | 2.5e-11 | 43.1 | 0.17 | 370.0 | 0.9 |
| pfu_aug1.0_28818.1_26438.t1 | 3 | 1 | LRR_4 | 149 | 189 | 1.6e-15 | 56.3 | 1.1e-08 | 2.3e-05 | 23.8 |
| pfu_aug1.0_28818.1_26438.t1 | 4 | 2 | LRR_8 | 149 | 191 | 2.5e-11 | 43.1 | 1.1e-05 | 0.023 | 14.4 |
| pfu_aug1.0_28818.1_26438.t1 | 5 | 1 | LRR_1 | 151 | 173 | 2.1e-06 | 26.9 | 0.0055 | 12.0 | 6.4 |
| pfu_aug1.0_28818.1_26438.t1 | 4 | 3 | LRR_8 | 173 | 246 | 2.5e-11 | 43.1 | 1.7e-09 | 3.7e-06 | 26.5 |
| pfu_aug1.0_28818.1_26438.t1 | 5 | 2 | LRR_1 | 174 | 192 | 2.1e-06 | 26.9 | 0.00034 | 0.73 | 10.0 |
| pfu_aug1.0_28818.1_26438.t1 | 3 | 2 | LRR_4 | 210 | 253 | 1.6e-15 | 56.3 | 1.1e-10 | 2.3e-07 | 30.2 |
| pfu_aug1.0_28818.1_26438.t1 | 5 | 3 | LRR_1 | 210 | 228 | 2.1e-06 | 26.9 | 0.04 | 84.0 | 3.8 |
| pfu_aug1.0_28818.1_26438.t1 | 5 | 4 | LRR_1 | 235 | 253 | 2.1e-06 | 26.9 | 0.019 | 40.0 | 4.7 |
| pfu_aug1.0_28818.1_26438.t1 | 3 | 3 | LRR_4 | 434 | 471 | 1.6e-15 | 56.3 | 0.0024 | 5.1 | 6.8 |
| pfu_aug1.0_28818.1_26438.t1 | 4 | 4 | LRR_8 | 434 | 445 | 2.5e-11 | 43.1 | 0.017 | 35.0 | 4.2 |
| pfu_aug1.0_28818.1_26438.t1 | 5 | 5 | LRR_1 | 435 | 447 | 2.1e-06 | 26.9 | 0.023 | 48.0 | 4.5 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| egg-4cell | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_28818.1_26438.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_28818.1_26438.t1 gtggtggggcttggctagttgctcaaaaagcagaacagagacggcgttttaaggcagtattatgtgccaagccacgcaca tattcccggatcaaagaggagaggaaacgtgcagagcgtgaaggtggccagatcaatgttgccacacaaagcctggctga tgatgaggaggaggaggaggaagcagaggctcctactttagatggattcttcttgatgaagcattgctgtgttgaagacc ctgcagatttatgctccgtgaacatttcgggacaagagcttagtgaagttaaggaggaggatttcgccctctttgataat gtggcctatgtaaatgctgccgagaattacctcccttttgaggcttttcgtggatttcctatcattcgtgagttagagat gccaataaatggacttagaggacttaaagtacaacctagtgattatcctacactagagatggttgatttgtcgtacaata atttgtcccaagaagatatcttgtccttaggaaccattccaaacctaaaaattcttcacctaacagggaataattttcgg actttacctcaagacttagctctcccacatattgactctcagagcaaaagacgaatcaagcgatattcaaaattggagat tttaatgttggatgagaacagactttctgatgtatctatattcgctgcccttgcaggtttacctaggttaagacatctga acttagaaaagaatgaaatctattatgtccctcagctaaaatctatagagggaacaatgacagtaaatgaagatgaaaaa gccactcgccgacttcaaaggtcagctaggaggtcagccaggcattcctcaaggtcaactagacaatcaaagtcacaaga tactgatgttgctaagcaaccaagtaaaagtcaaagtgatgtgaaacaaagtgaaagtaagaatttgatggaagtagagt cacaacagctgatgataaagacgtcaccaggaggaacggatggtaccgtaaccactccacctaaagaggaaaaagtagac ggggctcataacggccaggaggaggctaaggaaggggaggttacagagccaactacaacagagaaagaagaaaagaaaga tgataacttgttagatctagagtttggtaatgaccttggtgatctatcagccagaatgaaggacattgatgtaagtgctg agaatgaccttgaagtaaccacagctgaccgtggagataaacctcccagattaaacttggatgagggacagaaagtagga catggttctccagctttccaagaactgacttacctcaatctggcccataacatgatagtagaggaggaggcattattggc tgtagctgcctggcccatgctggtagagctgctaatacatgacaatccactcactacagagaacagcggagatccacctc tacttaatacattcctgtcagaaaggctgggcatccggattgtcaggaaaccatccaagggcatcaagaaaccagaggtc aaagtacaagccaaaaagtccagaaaggtttccactatagtaccaaagataccaaaagttcctgttgaagagttgctgat gcttgaggcaccaaagcctccctctggagctaaacccggcagtaaaaccatccagggactggacttacatcaacagggtc cattacctcctatccctcctacaagtcaacaacgccctcattccacaggtccaggggcaagaaagatggcaaccccagca gaggacctgccccctgcacctgtatatgataaattattctcagattcccctgtaccaccagatgatcccctccctggtcc ccctgtgtatggtcgtgtgcactcaggacacaagtctaatctaccagaagcagctacctatggtaggatgcattccccac cagaccagacagaagcccctgcaggaggcattccagaggctccagtatatggtagagtccactcccaggagggccatgta gatacagaggaaggtctaccacaggctgcctcgtatggcagattacactcacaggaacagacagataaacaaggagtaga aagcccagcattcttcatgactcaggtttacaagattttgaccaatttaattacttttgttgttttgatatggttttata ttatccagtttgtatatagaatagttttacgctcacattacaagtatgctcttgctaatgtgaattatctgctacaaaga aagctaaggccatgtaaaataaattctatgtttctcagataa |
|
Protein
| Protein ID | pfu_aug1.0_28818.1_26438.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_28818.1_26438.t1 GGAWLVAQKAEQRRRFKAVLCAKPRTYSRIKEERKRAEREGGQINVATQSLADDEEEEEEAEAPTLDGFFLMKHCCVEDP ADLCSVNISGQELSEVKEEDFALFDNVAYVNAAENYLPFEAFRGFPIIRELEMPINGLRGLKVQPSDYPTLEMVDLSYNN LSQEDILSLGTIPNLKILHLTGNNFRTLPQDLALPHIDSQSKRRIKRYSKLEILMLDENRLSDVSIFAALAGLPRLRHLN LEKNEIYYVPQLKSIEGTMTVNEDEKATRRLQRSARRSARHSSRSTRQSKSQDTDVAKQPSKSQSDVKQSESKNLMEVES QQLMIKTSPGGTDGTVTTPPKEEKVDGAHNGQEEAKEGEVTEPTTTEKEEKKDDNLLDLEFGNDLGDLSARMKDIDVSAE NDLEVTTADRGDKPPRLNLDEGQKVGHGSPAFQELTYLNLAHNMIVEEEALLAVAAWPMLVELLIHDNPLTTENSGDPPL LNTFLSERLGIRIVRKPSKGIKKPEVKVQAKKSRKVSTIVPKIPKVPVEELLMLEAPKPPSGAKPGSKTIQGLDLHQQGP LPPIPPTSQQRPHSTGPGARKMATPAEDLPPAPVYDKLFSDSPVPPDDPLPGPPVYGRVHSGHKSNLPEAATYGRMHSPP DQTEAPAGGIPEAPVYGRVHSQEGHVDTEEGLPQAASYGRLHSQEQTDKQGVESPAFFMTQVYKILTNLITFVVLIWFYI IQFVYRIVLRSHYKYALANVNYLLQRKLRPCKINSMFLR |
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