Gene
| Gene Model ID | pfu_aug1.0_289.1_14949 |
|---|---|
| Locus | scaffold289.1 : 7060 ... 20675 : - |
| To GenomeBrowser | scaffold289.1:7060..20675 |
| Genes list of scaffold | scaffold289.1 |
| Synonym | pfu_aug2.0_19.1_29994 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_289.1_14949.t1 | 3 | 1 | Prominin | 32 | 144 | 0.0 | 376.7 | 9.7e-35 | 1.6e-31 | 108.6 |
| pfu_aug1.0_289.1_14949.t1 | 3 | 2 | Prominin | 141 | 269 | 0.0 | 376.7 | 1.9e-11 | 3.2e-08 | 31.6 |
| pfu_aug1.0_289.1_14949.t1 | 3 | 3 | Prominin | 401 | 740 | 0.0 | 376.7 | 0.0 | 0.0 | 247.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_289.1_14949.t1 | gi|148705658|gb|EDL37605.1| | prominin 1, isoform CRA_f, partial [Mus musculus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_289.1_14949.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_289.1_14949.t1 atgataatattttgtgtttgtctcctgtttctcgtcccctgggtcggggagggggacggggccacgatatcggacgccta cgggaatacggcgtatgacaatggtaccgtggtatggggtagcgttcccgcgggacaggcgtatcagacagtgaatactt acgatgaaggggggctggggacactatttgcttttgcgaggagttttgtgaatacagtacaaccaaatcctttcccattt gatttgatcaaacaagttctgaatggagaatttgacatttctgcccaatacatggagcttatcaacttcgccatgggttt tggtatctgctttgtgattggtctgttatatgtgatattcttgcctctgtgtggatgctgcttttgctgctgccggtgtt gtggtaactgtggaggtgacatgaaacagcaattcaagttcgttgccattgatatgttcacaatagtagcacaagctcta attcgagatatttctggaatcggtgccgtgttgactccagctatattctcagttttgaatattgacccagtcatcaacgc cgtcatagccttggatacgaacgtcaaccaaatcgacgctgctttggaccaagtgatatcggacctgaatgcattacaga acgcgacagacggactgacaacggatttgaacactctgaagacggacatagatacaacaaagaccggatgtagcagcgac tgtacaccgaccacggcctgtgacagttttgatacgtcacagttggctgtctcggccgatttcagctccttcaacacaat cagcaatcaagagcgttgtcgcacagaacttgactggaattgcactagcggcaaaaagcgctctagacgatatggagaac acaatcaattcatcgacatcgtccatccaatcatgtatgacaatatatatctttctttcattcttcctttctttcttctt tctttacttcttgagcagtattattttgatgaaaaatcgatcttatttgtgctttcttctaaaatgcagttcttgtttac atttctagctctacagagctccttcgacagtttccagtccacactaaatacgatgaccaatgatttagaagctcaagtcc aaggggcaatagatacaacaaacttgaagatggaacttggcagcttttttagaacatcgcttgattatgacgtatacagg gcagtcgccattatgttcctgctgggagccttgctgatgctgttgacgaccatctcgtttatgattggtgggaattttga gaagatttgtcaaaccatgtttgatcttacacttttcaaagatttcatagacactggaggtatccctggattcgcgcttg gtaccatgttgttgaacgatccttccatcaacatcagtctctacaacgttctactaggatgtagagcgaacaaggctcca tttgagcttctgtaccttaattctttggtacccatagacgactacctgaattatagccagtatacgggtgatattgacac tcagatgaacagtataaccaccagtgtagatctgagtagttttactgtactaacaccagatatggataacagcctcaacg acttcaaaaactctggaattgataatatcaacttcacttccatcaatgacacgctaagtcagaatattgtgaccattgac ctgacctctataatcaatggtatgacctccatcaggaacatgtgtaacaatccgacccagtctagatgggatacccacat atcggatacgacgacaataagagacgttactttaccggatgtagaagccaaaaaggctgcgttacaaagttccatgggta cgctagaaaacgccataagtggagtcactgcaaacattgacaatgtccgagctacagctcaagacgcagacgaccagatt caaaacaatgtcacagctgttcttaccgacgttgcaaatacatataaaacaaagctcttgggatacgttgattcttacat caacaggacccgatatttgatatacaacgaacttgcggcatgtttgcctttgtggaatttatacgattctttcactacaa ctttgtgtaaatacatggtggacgcattgaacggattttggttcgggactggatggggattggtgttttttgtaccggtt ataattgtggcagtcaaaacgtccaaatattataggaaaatgaaaaagagcgagggatacggagaggactcggacgacga agatgaatatgactctgacgatgatgactatgattataattatgcaaagcgcgcgccccgaccggaggcgcagagatatc cccaacgttataaccagggtattagcaagaaggcacaacaaagacgaaacaaagtggactctttttag |
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Protein
| Protein ID | pfu_aug1.0_289.1_14949.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_289.1_14949.t1 MIIFCVCLLFLVPWVGEGDGATISDAYGNTAYDNGTVVWGSVPAGQAYQTVNTYDEGGLGTLFAFARSFVNTVQPNPFPF DLIKQVLNGEFDISAQYMELINFAMGFGICFVIGLLYVIFLPLCGCCFCCCRCCGNCGGDMKQQFKFVAIDMFTIVAQAL IRDISGIGAVLTPAIFSVLNIDPVINAVIALDTNVNQIDAALDQVISDLNALQNATDGLTTDLNTLKTDIDTTKTGCSSD CTPTTACDSFDTSQLAVSADFSSFNTISNQERCRTELDWNCTSGKKRSRRYGEHNQFIDIVHPIMYDNIYLSFILPFFLL SLLLEQYYFDEKSILFVLSSKMQFLFTFLALQSSFDSFQSTLNTMTNDLEAQVQGAIDTTNLKMELGSFFRTSLDYDVYR AVAIMFLLGALLMLLTTISFMIGGNFEKICQTMFDLTLFKDFIDTGGIPGFALGTMLLNDPSINISLYNVLLGCRANKAP FELLYLNSLVPIDDYLNYSQYTGDIDTQMNSITTSVDLSSFTVLTPDMDNSLNDFKNSGIDNINFTSINDTLSQNIVTID LTSIINGMTSIRNMCNNPTQSRWDTHISDTTTIRDVTLPDVEAKKAALQSSMGTLENAISGVTANIDNVRATAQDADDQI QNNVTAVLTDVANTYKTKLLGYVDSYINRTRYLIYNELAACLPLWNLYDSFTTTLCKYMVDALNGFWFGTGWGLVFFVPV IIVAVKTSKYYRKMKKSEGYGEDSDDEDEYDSDDDDYDYNYAKRAPRPEAQRYPQRYNQGISKKAQQRRNKVDSF |
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