Gene
| Gene Model ID | pfu_aug1.0_289.1_14951 |
|---|---|
| Locus | scaffold289.1 : 37216 ... 49415 : - |
| To GenomeBrowser | scaffold289.1:37216..49415 |
| Genes list of scaffold | scaffold289.1 |
| Synonym | pfu_aug2.0_19.1_29998 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_289.1_14951.t1 | 6 | 1 | Collagen | 11 | 66 | 0.0 | 154.5 | 4.7e-12 | 3.5e-08 | 32.8 |
| pfu_aug1.0_289.1_14951.t1 | 6 | 2 | Collagen | 57 | 114 | 0.0 | 154.5 | 1.5e-13 | 1.1e-09 | 37.6 |
| pfu_aug1.0_289.1_14951.t1 | 6 | 3 | Collagen | 129 | 182 | 0.0 | 154.5 | 7.2e-12 | 5.3e-08 | 32.2 |
| pfu_aug1.0_289.1_14951.t1 | 6 | 4 | Collagen | 172 | 229 | 0.0 | 154.5 | 9.9e-12 | 7.4e-08 | 31.8 |
| pfu_aug1.0_289.1_14951.t1 | 6 | 5 | Collagen | 247 | 296 | 0.0 | 154.5 | 2.4e-07 | 0.0018 | 17.7 |
| pfu_aug1.0_289.1_14951.t1 | 6 | 6 | Collagen | 272 | 329 | 0.0 | 154.5 | 4.5e-11 | 3.4e-07 | 29.7 |
| pfu_aug1.0_289.1_14951.t1 | 2 | 1 | C4 | 333 | 441 | 0.0 | 281.0 | 2.8026e-45 | 2.50006e-41 | 140.1 |
| pfu_aug1.0_289.1_14951.t1 | 2 | 2 | C4 | 444 | 554 | 0.0 | 281.0 | 1.4013e-45 | 1.19993e-41 | 141.1 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_289.1_14951.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_289.1_14951.t1 atggaatcagaggtgactccggattcccagggagagcccggtaggcagggcttcgatggacagccaggagtcaacgggga cgtaggaccagacggaattccaggagaaagaggtcgtgttggcggtccaggagacgatgggttcagaggtcgtgatggtt tacctggactaaacggaattaaaggattccctggagataatggagaaccaggccaagcgggagcgagaggagactttggt ttacctggcactgatggcttaacaggcctgaagggcttgcccggctcaccaggtttacctggactcccgggcttgcaggg ccagaaaggtaaccagggcagaagtataaacgctagaaaaggagagccaggagatgacggattatttggtttcccaggac gtcagggagaaaagggtttccctggccgtcccggtttaccgggtattgacggatctaagggaggaaatggtttacctgga ttcccaggggaagacggacaagttggtgatgatggactgccaggcttgtttggagagccaggacttgatggcataccagg tgaacgaggaagaataggcgatcctggtcgtgatggtgaacctggagtccctggattccaaggagacccaggaaggcccg gtctgccaggattctttggtctgaaaggtgaaaaaggtcaaccaggagatgttggcatcccaggaccgttcccagatccc aggccaaacattaacgacaagggagaacgaggattcccagggcctcgtggtctcagaggcatgaaaggccagccaggacc tcaaggaggtgacgggccaggcggagctagaggtaacccaggagataatggtcctgtgggaattcccggacgtaaaggtg attcaggagagggtggacctgatggtattcccggggagaggggacgtccgggactgccaggagctaagggtttcccagga ctggagggtcagccaggacttcctggaggaggatacggaatactcattgcaagacacagtcagaccactattgtaccatc atgtccagctggcaccgtcaagttatgggacggctactcactggttcatatcatgggaaacggcaagagtcatggacaag atctaggtacatccggtagctgcttgcgtcgtttccagaccatgcccttcatgttctgtgacatcaacaacgtgtgtaat ctggcgtggaggaacgattacagttactggttatctacccttgagccaatgacggccatgatgaatcccatagaggggtc gcctctacagcggtacatcagtaggtgctccgtgtgtgaagcaccatcggaggtgatggcagtccatagccaaacattaa gaattccagattgtccaagaggatttagaagtttatgggaaggtttcagctttatgatgaattctggagctggtggtcag ggtgcaggcaattctttggcatcccctgggtcgtgcctggaggacttcagagccacacccattatcgagtgccgagggcg gggctcttgtaattactacgctacgtcctatagtttctggttggcaaccattgatcagttcagtcaattccgttcacctc tctctgagacattaaaagcaggaaaccaaaggactagaataggacgatgcagagtctgtgctaggggataa |
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Protein
| Protein ID | pfu_aug1.0_289.1_14951.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_289.1_14951.t1 MESEVTPDSQGEPGRQGFDGQPGVNGDVGPDGIPGERGRVGGPGDDGFRGRDGLPGLNGIKGFPGDNGEPGQAGARGDFG LPGTDGLTGLKGLPGSPGLPGLPGLQGQKGNQGRSINARKGEPGDDGLFGFPGRQGEKGFPGRPGLPGIDGSKGGNGLPG FPGEDGQVGDDGLPGLFGEPGLDGIPGERGRIGDPGRDGEPGVPGFQGDPGRPGLPGFFGLKGEKGQPGDVGIPGPFPDP RPNINDKGERGFPGPRGLRGMKGQPGPQGGDGPGGARGNPGDNGPVGIPGRKGDSGEGGPDGIPGERGRPGLPGAKGFPG LEGQPGLPGGGYGILIARHSQTTIVPSCPAGTVKLWDGYSLVHIMGNGKSHGQDLGTSGSCLRRFQTMPFMFCDINNVCN LAWRNDYSYWLSTLEPMTAMMNPIEGSPLQRYISRCSVCEAPSEVMAVHSQTLRIPDCPRGFRSLWEGFSFMMNSGAGGQ GAGNSLASPGSCLEDFRATPIIECRGRGSCNYYATSYSFWLATIDQFSQFRSPLSETLKAGNQRTRIGRCRVCARG |
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