Gene
| Gene Model ID | pfu_aug1.0_289.1_14952 |
|---|---|
| Locus | scaffold289.1 : 49718 ... 78845 : - |
| To GenomeBrowser | scaffold289.1:49718..78845 |
| Genes list of scaffold | scaffold289.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_289.1_14952.t1 | 10 | 1 | Collagen | 52 | 104 | 0.0 | 301.9 | 3.1e-11 | 4.5e-07 | 29.3 |
| pfu_aug1.0_289.1_14952.t1 | 10 | 2 | Collagen | 99 | 154 | 0.0 | 301.9 | 3.1e-13 | 4.6e-09 | 35.6 |
| pfu_aug1.0_289.1_14952.t1 | 10 | 3 | Collagen | 162 | 215 | 0.0 | 301.9 | 2.2e-13 | 3.2e-09 | 36.1 |
| pfu_aug1.0_289.1_14952.t1 | 10 | 4 | Collagen | 221 | 236 | 0.0 | 301.9 | 4.5e-05 | 0.66 | 9.5 |
| pfu_aug1.0_289.1_14952.t1 | 10 | 5 | Collagen | 261 | 310 | 0.0 | 301.9 | 8.2e-09 | 0.00012 | 21.5 |
| pfu_aug1.0_289.1_14952.t1 | 10 | 6 | Collagen | 345 | 402 | 0.0 | 301.9 | 9.8e-15 | 1.4e-10 | 40.4 |
| pfu_aug1.0_289.1_14952.t1 | 10 | 7 | Collagen | 384 | 442 | 0.0 | 301.9 | 4.3e-12 | 6.3e-08 | 32.0 |
| pfu_aug1.0_289.1_14952.t1 | 10 | 8 | Collagen | 446 | 489 | 0.0 | 301.9 | 5.7e-11 | 8.4e-07 | 28.4 |
| pfu_aug1.0_289.1_14952.t1 | 10 | 9 | Collagen | 494 | 546 | 0.0 | 301.9 | 4.3e-13 | 6.4e-09 | 35.2 |
| pfu_aug1.0_289.1_14952.t1 | 10 | 10 | Collagen | 554 | 579 | 0.0 | 301.9 | 0.3 | 4500.0 | -2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_289.1_14952.t1 | gi|268322308|emb|CBH32885.1| | alpha 1 type IV collagen [Haliotis tuberculata] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_289.1_14952.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_289.1_14952.t1 atgaattctcggatagttattctcctcgtagttctagcagccactctcttggatgtcgcgcttggagccgcttgtaaagg ctgcggcactacagtttgcttatgtgcgggacagaagggaattcgaggtaatagaggcttgcccggtctgagaggacccc cgggcctgccaggatttattggcccagaggggccgcccggtccacggggcatccaaggagaaagcggcgaggatggcgcc agcggtccaaaaggagataggggtgatatggggctgcctggattcacgggcgtgccaggagtaccgggttcagagggtct tgaaggtccggtcggcccgaaaggttacccaggatgcaacggaacaaagggagaaaatggtcggtcaggtcgccctggac aggagggtctacaaggacccaggggtgaatcgggtgctccaggattaaagggagagcctggagatcgtgtagactctgat gtcggagagaagggagcgccaggagaacctggaagaacaggacaatcgggaccaagaggaatacctggtccaccaggtga tagaggcccttatggtgacgcaggcttaccgggagaaactggaacggtgggaataccaggagaaaagggagaaatgggag agacaaaacctgtggaaaacggaatgcctggtgatcccggcccgcaaggaccccctgggcccccaggagagattctgcaa atacgaacgatcccaccagagcagatcttacagggtgaggtaggagagcctggccctataggcccagtgggcttctccgg tatcccaggagtcacaggtatcaggggtgatgatggcagaaaaggagaacctggagcaaagggaccacctggattctctg gggagcaaggaagaagaggcaaaagaggaaaggatggcccacaaggagaatatggccccaagggcatggcaggccaggta ggagaaccttgtggtgtgtgtcccccaggattgcctggtctccctggagattctggagacccaggattggacggtttacc gggcttggatggacagccaggattaccaggcctgtttggtgatgtcggtttcccaggaattccaggtttacctggtcgga atggagagaagggagatgatggaagacctggtttacaaggtttagacggtttgccgggattacctggagaagacggtgta ccaggaatggtgggtgattccattgatggggaggtaggacgggtcgggcctaaaggctttgaaggactccccggcttccc tggaatgaaaggatttaaaggtccaaaaggtgaacctggaagaccgatagtggaacaaggaaagattggagacatcggag aaatgggtctgccaggattggatggaatggacgggcttcctggactaccaggtgatcctggagtgagtggacttcctggt ttaccaggatttaagggtgagagaggtggaactctccaaggtccacccggagcaaagggcttcagaggcagacccggagt cccaggagagacgggtttccgaggggctcctggggatgctgggttgcctgggttaccaggaactgacggcgagaccggaa caccaggccttcctggtttccaagggatagatggcgaacaaggtagagagggtgcaagaggcgagcccgggctaccagga cttcctggactgccaggattgtcagggccaaaaggagaccggggagccacagggcctaatgggggccctggcattccagg ggaacagggccaagttggtgcatttggtgaggatggtgcacctggacgtcggggattggacggtccaaatgggagaaagg gagacgcaggagaaaggggtgtgtccttacctggacaacaaggtttacctggaagaccaggccaagatggtttacctgga cttgatggtttacctggagaaccaggacctgatggtgaaatgggaagaccaggtaggatttccaacatcttagatcatat tgtggagtaa |
|
Protein
| Protein ID | pfu_aug1.0_289.1_14952.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_289.1_14952.t1 MNSRIVILLVVLAATLLDVALGAACKGCGTTVCLCAGQKGIRGNRGLPGLRGPPGLPGFIGPEGPPGPRGIQGESGEDGA SGPKGDRGDMGLPGFTGVPGVPGSEGLEGPVGPKGYPGCNGTKGENGRSGRPGQEGLQGPRGESGAPGLKGEPGDRVDSD VGEKGAPGEPGRTGQSGPRGIPGPPGDRGPYGDAGLPGETGTVGIPGEKGEMGETKPVENGMPGDPGPQGPPGPPGEILQ IRTIPPEQILQGEVGEPGPIGPVGFSGIPGVTGIRGDDGRKGEPGAKGPPGFSGEQGRRGKRGKDGPQGEYGPKGMAGQV GEPCGVCPPGLPGLPGDSGDPGLDGLPGLDGQPGLPGLFGDVGFPGIPGLPGRNGEKGDDGRPGLQGLDGLPGLPGEDGV PGMVGDSIDGEVGRVGPKGFEGLPGFPGMKGFKGPKGEPGRPIVEQGKIGDIGEMGLPGLDGMDGLPGLPGDPGVSGLPG LPGFKGERGGTLQGPPGAKGFRGRPGVPGETGFRGAPGDAGLPGLPGTDGETGTPGLPGFQGIDGEQGREGARGEPGLPG LPGLPGLSGPKGDRGATGPNGGPGIPGEQGQVGAFGEDGAPGRRGLDGPNGRKGDAGERGVSLPGQQGLPGRPGQDGLPG LDGLPGEPGPDGEMGRPGRISNILDHIVE |
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