Gene
| Gene Model ID | pfu_aug1.0_28946.1_26446 |
|---|---|
| Locus | scaffold28946.1 : 6126 ... 7363 : + |
| To GenomeBrowser | scaffold28946.1:6126..7363 |
| Genes list of scaffold | scaffold28946.1 |
| Synonym | pfu_aug2.0_1616.1_21717 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_28946.1_26446.t1 | 1 | 1 | Telomere_Sde2_2 | 159 | 218 | 5.3e-27 | 92.8 | 1.2e-30 | 9.0e-27 | 92.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_28946.1_26446.t1 | gi|344278393|ref|XP_003410979.1| | PREDICTED: protein SDE2 homolog [Loxodonta africana] | 5.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| adductorMuscle | 2 |
| maleGonad | 2 |
| mantle | 1 |
| mantleEdge | 1 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_28946.1_26446.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_28946.1_26446.t1 atggacttccgaataaaagttgaaaaaggtgacaatggtgtaaaatccaaaattgacaatgttgagacccagagtgatgc taaagtcttgcccttccgaataaaagtcgaaaatggggaaaatagtgtaaaatctgagatggacaatattgaaacgcaga atgatgctaaagcgttgacctttcgaataaaagttgaaaatggggagaacagaggtgtaaaatccaaaatggaggatgaa acacagaatcatgctgaagacccgtctgtccgaataaaagtcgaaaattgtgaggacaatgtaaaatctggaattaacaa aattgaaacgcagaatgatactaaagatttaacaaatactggaggaaacgatgctgcaaaggaaaatccaaacacgaaag atatttccgagcattcagagccttctgatattaaagatagcagagaagctaatactgagcgagaattagggccagtagat cttgaccaatgtaactcggcagatgatttgatcgctttcggtctcgataaattgaaggaagaattaatggcacggcagct gaaatgtggaggaactttacaggagcgtgctcagagactattttccgttaaaggactgacgcgggatcaaattgatccta cactgtttgcaaaacctacaaaaggaaagaagaaaaagtga |
|
Protein
| Protein ID | pfu_aug1.0_28946.1_26446.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_28946.1_26446.t1 MDFRIKVEKGDNGVKSKIDNVETQSDAKVLPFRIKVENGENSVKSEMDNIETQNDAKALTFRIKVENGENRGVKSKMEDE TQNHAEDPSVRIKVENCEDNVKSGINKIETQNDTKDLTNTGGNDAAKENPNTKDISEHSEPSDIKDSREANTERELGPVD LDQCNSADDLIAFGLDKLKEELMARQLKCGGTLQERAQRLFSVKGLTRDQIDPTLFAKPTKGKKKK |
|