Gene
| Gene Model ID | pfu_aug1.0_28982.1_55283 |
|---|---|
| Locus | scaffold28982.1 : 1 ... 7357 : + |
| To GenomeBrowser | scaffold28982.1:1..7357 |
| Genes list of scaffold | scaffold28982.1 |
| Synonym | pfu_aug2.0_423.1_10759 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_28982.1_55283.t1 | 1 | 1 | zf-C3HC4_2 | 3 | 30 | 3.3e-08 | 33.4 | 1.4e-10 | 6.5e-08 | 32.4 |
| pfu_aug1.0_28982.1_55283.t1 | 1 | 1 | zf-C3HC4_3 | 3 | 36 | 5.3e-07 | 29.2 | 2.1e-09 | 9.5e-07 | 28.3 |
| pfu_aug1.0_28982.1_55283.t1 | 1 | 1 | zf-RING_2 | 3 | 31 | 1.9e-11 | 43.6 | 8.5e-14 | 3.9e-11 | 42.5 |
| pfu_aug1.0_28982.1_55283.t1 | 1 | 1 | zf-C3HC4 | 4 | 30 | 3.8e-07 | 29.6 | 2.1e-09 | 9.8e-07 | 28.3 |
| pfu_aug1.0_28982.1_55283.t1 | 1 | 1 | zf-rbx1 | 7 | 31 | 3.9e-08 | 33.2 | 8.5e-11 | 3.9e-08 | 33.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_28982.1_55283.t1 | gi|348510273|ref|XP_003442670.1| | PREDICTED: TRAF-interacting protein-like [Oreochromis niloticus] | 1.0e-16 |
Transcript
| Transcript ID | pfu_aug1.0_28982.1_55283.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_28982.1_55283.t1 gtagccatcactgccttgccatgtggtcacacttttcacggtacctgcattgaaaaatggctgcactctaataactcttg tcccagctgtcgcaatcgtgtggaacgtagtaaagtcgtatggaggctcttctttgactgtgatgccgatcacgaggaaa acactgattgtggaagactcaataacaaaatcagggaattgcaagtgtcgctatcagagaaagaaaaggcggctagtgac gtacagaaagataatgactcattactgaagaaattaaaaggtgtcgaaaaggagaagaaacaattggacaattccttgcg ctcggaaaggacagagatagaatccttgaagaagcagcttcagtattatcagtattcacagaatagtctggataaagaga aggaggagtgtcggaaaatcaaacgaaaattcatagaatatcagaacattgagaaacttctaacag |
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Protein
| Protein ID | pfu_aug1.0_28982.1_55283.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_28982.1_55283.t1 VAITALPCGHTFHGTCIEKWLHSNNSCPSCRNRVERSKVVWRLFFDCDADHEENTDCGRLNNKIRELQVSLSEKEKAASD VQKDNDSLLKKLKGVEKEKKQLDNSLRSERTEIESLKKQLQYYQYSQNSLDKEKEECRKIKRKFIEYQNIEKLLT |
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