Gene
| Gene Model ID | pfu_aug1.0_29.1_65190 |
|---|---|
| Locus | scaffold29.1 : 51665 ... 70955 : - |
| To GenomeBrowser | scaffold29.1:51665..70955 |
| Genes list of scaffold | scaffold29.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_29.1_65190.t1 | 2 | 1 | PEMT | 25 | 57 | 3.7e-13 | 49.5 | 0.13 | 970.0 | -0.1 |
| pfu_aug1.0_29.1_65190.t1 | 2 | 1 | ICMT | 47 | 64 | 3.8e-30 | 103.9 | 0.65 | 4800.0 | -2.2 |
| pfu_aug1.0_29.1_65190.t1 | 2 | 2 | PEMT | 110 | 213 | 3.7e-13 | 49.5 | 4.9e-17 | 3.7e-13 | 49.5 |
| pfu_aug1.0_29.1_65190.t1 | 2 | 2 | ICMT | 114 | 206 | 3.8e-30 | 103.9 | 5.1e-34 | 3.8e-30 | 103.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_29.1_65190.t1 | gi|318037369|ref|NP_001187809.1| | protein-S-isoprenylcysteine O-methyltransferase [Ictalurus punctatus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_29.1_65190.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_29.1_65190.t1 atgaagcgtttatctaataaaaagaaaatgaagaggatctcgaaggtggctgttagaggaggcttccttggtacctgctt tggtctaggtttgctgataagccttgccgatacatcatggacctactttggatggtacgctatggtgctcagcttcttcc acttctccgagtacttcaccactgcggtgacgaatccacgctcgttgacactggattctttcttacttgatcatagcagg gagtataaactggcggcagtggcaagctggctggaatttgccatagaatggtacatcgctccaggcttaaagagattcca ttacataagctttgtaggattgctgctgatcattcttggagaagtattgcgtaaagtcagtatgtttacagcgaaaacaa actttaatcattacgtacagttcaggaaacatagtgaccatgttttagtgacgtccggcgtgtattccttctgcagacat ccttcatatgtaggatggttctactggagtatagggacacagatgatattatttaatccagtttgtattgttgtatacac ccttgtctcatggcgatttttccgagccagaatttacgaggaagaaatctacctcctgaatttcttcggagaagattacg tcgactatcagaggagagttggaacgggactgccgtttatccaaggatataacggacaagtgtag |
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Protein
| Protein ID | pfu_aug1.0_29.1_65190.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_29.1_65190.t1 MKRLSNKKKMKRISKVAVRGGFLGTCFGLGLLISLADTSWTYFGWYAMVLSFFHFSEYFTTAVTNPRSLTLDSFLLDHSR EYKLAAVASWLEFAIEWYIAPGLKRFHYISFVGLLLIILGEVLRKVSMFTAKTNFNHYVQFRKHSDHVLVTSGVYSFCRH PSYVGWFYWSIGTQMILFNPVCIVVYTLVSWRFFRARIYEEEIYLLNFFGEDYVDYQRRVGTGLPFIQGYNGQV |
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