Gene
| Gene Model ID | pfu_aug1.0_2917.1_30279 |
|---|---|
| Locus | scaffold2917.1 : 24392 ... 34235 : - |
| To GenomeBrowser | scaffold2917.1:24392..34235 |
| Genes list of scaffold | scaffold2917.1 |
| Synonym | pfu_aug2.0_14.1_13375 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2917.1_30279.t1 | 2 | 1 | DUF2359 | 128 | 182 | 0.0 | 220.4 | 5.2e-15 | 7.7e-11 | 41.1 |
| pfu_aug1.0_2917.1_30279.t1 | 2 | 2 | DUF2359 | 227 | 503 | 0.0 | 220.4 | 0.0 | 0.0 | 181.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2917.1_30279.t1 | gi|348574333|ref|XP_003472945.1| | PREDICTED: transmembrane protein 214 isoformX1 [Cavia porcellus] | 8.40779e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2917.1_30279.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2917.1_30279.t1 atgtaccgtactatttatactgtagatgtcaaagaaactttgagctcatatcgaataagtattgccttctttcttcaaat aaagattacagaggaggatttgaaggcagctctgacagtgtccaagtccacgttccctgataataaagatctctggctga aagatctggcctctgttctcaacatgaagctggatcattgtgctgagtccagtcctattatgaagaacaaaccattagat tttccggtatgtcatcttgacaagaaatgccagacattgatcaagtctgttattagagaggctaattcagagactcagga tcacatgctgtatcactgtataaccaccatgctcaacgacatgtctaaagggaattctacatacggctacagaatattta tacagctgctgactgccgtcaaacctaatatggctctctccaagacaaagcagtacctagagttgttaacagccaatcag aacaagtctcagcaaagtttagctattctgtggtgcctcggtcagggaggtatcaaggacttcaagattgctctaagagg taagctactaaatgacctcaaggtcactgaagattccagtatggatagaactgatgatgcccatgctgaggacgaaggcc atggcaccttattgtgtagagtacctggaaatggtcttcaggtattaaccagtttaatgacatgtttatcgagtgataag cagtgctatgctgtatggtgtcagatgtacactaaacatctttcacagaccagcattgttcttcaccatatcttagacaa ctggagtactctgtcctctaagctcgatcgtaagctgtttctgaacatgctccggtccttctctataacaaacgatgaac tggcttcccaaggcagaaatagtgtggagggataccaggagtgtgtcagtgcttgtaaggaactgatgcagaagctagag gatggagggtttccatggttttgggttgtttttatgctgatgtctgtaatggtggccataattgcctatgatgtgtatac aaacaaaactgtccgagctagcagaacagtgcagttcttggaagactatgggattctagcattcacagagagagtttata acacagtctctgtatacgtcagctctgcttacagctggttgattgtgaatgtacctgtgtacactaacaaagtagtatct gctgttggaccttacgtcagattggcttgggacaaggctgtacaggcattcaatgtaatagctgccgttagcagccctta tcgccaatggatgtatctaaaactaatggagctatgtagtaaaatatatgaactttcccctggcctttggtcagatttag gaaattatttatggttatcatgggacttctttagggagtactctgtatggatttggtcccgagtggccagtgttattgtg ctttcatataaatgggtggagaaagaaatattattaggccaatatactcctgatgttctacagcattttttccgttctgc cataacatttgtatataactccaccgtgtccatatcaaactggtgcagcaatgttatacagacttctgtctcataa |
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Protein
| Protein ID | pfu_aug1.0_2917.1_30279.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2917.1_30279.t1 MYRTIYTVDVKETLSSYRISIAFFLQIKITEEDLKAALTVSKSTFPDNKDLWLKDLASVLNMKLDHCAESSPIMKNKPLD FPVCHLDKKCQTLIKSVIREANSETQDHMLYHCITTMLNDMSKGNSTYGYRIFIQLLTAVKPNMALSKTKQYLELLTANQ NKSQQSLAILWCLGQGGIKDFKIALRGKLLNDLKVTEDSSMDRTDDAHAEDEGHGTLLCRVPGNGLQVLTSLMTCLSSDK QCYAVWCQMYTKHLSQTSIVLHHILDNWSTLSSKLDRKLFLNMLRSFSITNDELASQGRNSVEGYQECVSACKELMQKLE DGGFPWFWVVFMLMSVMVAIIAYDVYTNKTVRASRTVQFLEDYGILAFTERVYNTVSVYVSSAYSWLIVNVPVYTNKVVS AVGPYVRLAWDKAVQAFNVIAAVSSPYRQWMYLKLMELCSKIYELSPGLWSDLGNYLWLSWDFFREYSVWIWSRVASVIV LSYKWVEKEILLGQYTPDVLQHFFRSAITFVYNSTVSISNWCSNVIQTSVS |
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