Gene
| Gene Model ID | pfu_aug1.0_2917.1_30281 |
|---|---|
| Locus | scaffold2917.1 : 50026 ... 65094 : + |
| To GenomeBrowser | scaffold2917.1:50026..65094 |
| Genes list of scaffold | scaffold2917.1 |
| Synonym | pfu_aug2.0_14.1_13373 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2917.1_30281.t1 | 2 | 1 | Uso1_p115_head | 218 | 262 | 7.2e-26 | 90.6 | 2.3e-09 | 1.1e-05 | 24.3 |
| pfu_aug1.0_2917.1_30281.t1 | 2 | 2 | Uso1_p115_head | 256 | 366 | 7.2e-26 | 90.6 | 1.1e-22 | 5.2e-19 | 68.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2917.1_30281.t1 | gi|91088529|ref|XP_972184.1| | PREDICTED: general vesicular transport factor p115 isoform X1 [Tribolium castaneum] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2917.1_30281.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2917.1_30281.t1 atgctgtgggtttctgacgatgatttaatacataatgtagagagacttgtggatagagtacagtcatctaccctgctaga tgataggcgagatgctgttcgggcactcaaagccatgtcaaagaagttccgccttgaggtagggacccaagccatggaca ttctggtcaagactctggagatggataggagtgatgctgagattacaggatattgtctggatacgctgtgtaacatcatg tctaaccagccctctgaagacgatgacgaaagtaatataccaagtaatgtagcagaggacctagggactcagttcgcgga aatatttacaaagaatcaagacaatatatcgctattgttatcattgttggaggaatatgacttccatgtacgatggccaa cggtcaagttactaaccattttgttgatgaatcggggtaaagaattacaggaggttatactggtcagtcctatgggtgtg tcgaagctgatggaccttctgtcagatagcagagagatcatacgtaatgatgccttgttgcttctgacgcaattaacaaa aaataatacaaatctacagaaaattgtggcttttgaaaacgcatttgaacgtttactagatatcgtcagggatgaaggaa acagtgatggagctctgcttcatgccattatggggaatgagcaacagaaagagcagctgttacgtgtacaactagctaca agcttaggcagtccccctgtctctctgttacagcagtgctgtaatatactggcccagttaataacccaagtatcggcctc tgataacgatgagaatgagtcgatcgtccagggattgtgtgcattctcactgggaatatctgttctcttcaatgatgact caaatgaaactttcaataaagtttctttgagacaaataatagagaagaggataggattagaaaactttaccgacaaactt acacaagtgcctaagacagagagttatacaagggctgccaagaagccacaccttcactacaaacagccgaatgaagttat ctttgatcatgaattcactaaggcattcaaacttttagagactgatgcattaaaagcagtctcgtcagaagcagtaatca aagaacatcaagccaaaatggccagcatgcaggaacatgagaaagtggtcaaacagtacaaagatctcatcgaagaacag gaccaacgtttgaatgaatcccagaaccagctgttacagcttcagtccaaacactccatggcccagcaagaactaaaaca gctacaggatctggtccagcaactcaaggaccagaatgcactgctcaaagtacaaaaaggtactgttgtgaatcacgttc ctgatacaaaaatggaagaggaagtgaaatcattacgtacagatatagaaaacctccgacttcaaaacgctgagaaagac tcacggatagaaaaactggcaagttttgtttttcagcaaacagatttaactttagcaggaacacgagttttaaaccagag tgaagaagataaggaaaataatccaagtgaaagtgctgtgttacaaactacaatatctaggttacaaagtgatttacagg aattaagacagactgttgcagaaaaagataatgaaattagtaggataaatacacaaaatagtgatgctttaaaacaaata gaagatttaaatcagagattatctagcagctcagaaaacctaccaggccctgaagaagttcaaaaacttttagaagagaa aatgaccctgcaggaaagagtcaagaaatcgaatgaggaaagcctgaaaaatttagataaatataataaatgtgaagaag aaaaaggtaaattaacagatgaaaagaaggaggttcaagaggaattagaaactttgaaaaaggaacaagaagatttacta gtattacttgcagaccaagatacaaaaatagagaaatacaaagccaagttaaaggaggctggtgtacag |
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Protein
| Protein ID | pfu_aug1.0_2917.1_30281.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2917.1_30281.t1 MLWVSDDDLIHNVERLVDRVQSSTLLDDRRDAVRALKAMSKKFRLEVGTQAMDILVKTLEMDRSDAEITGYCLDTLCNIM SNQPSEDDDESNIPSNVAEDLGTQFAEIFTKNQDNISLLLSLLEEYDFHVRWPTVKLLTILLMNRGKELQEVILVSPMGV SKLMDLLSDSREIIRNDALLLLTQLTKNNTNLQKIVAFENAFERLLDIVRDEGNSDGALLHAIMGNEQQKEQLLRVQLAT SLGSPPVSLLQQCCNILAQLITQVSASDNDENESIVQGLCAFSLGISVLFNDDSNETFNKVSLRQIIEKRIGLENFTDKL TQVPKTESYTRAAKKPHLHYKQPNEVIFDHEFTKAFKLLETDALKAVSSEAVIKEHQAKMASMQEHEKVVKQYKDLIEEQ DQRLNESQNQLLQLQSKHSMAQQELKQLQDLVQQLKDQNALLKVQKGTVVNHVPDTKMEEEVKSLRTDIENLRLQNAEKD SRIEKLASFVFQQTDLTLAGTRVLNQSEEDKENNPSESAVLQTTISRLQSDLQELRQTVAEKDNEISRINTQNSDALKQI EDLNQRLSSSSENLPGPEEVQKLLEEKMTLQERVKKSNEESLKNLDKYNKCEEEKGKLTDEKKEVQEELETLKKEQEDLL VLLADQDTKIEKYKAKLKEAGVQ |
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