Gene
| Gene Model ID | pfu_aug1.0_2978.1_23137 |
|---|---|
| Locus | scaffold2978.1 : 29346 ... 44043 : + |
| To GenomeBrowser | scaffold2978.1:29346..44043 |
| Genes list of scaffold | scaffold2978.1 |
| Synonym | pfu_aug2.0_476.1_20816 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2978.1_23137.t1 | 2 | 1 | Neur_chan_LBD | 31 | 239 | 0.0 | 290.4 | 0.0 | 0.0 | 214.5 |
| pfu_aug1.0_2978.1_23137.t1 | 2 | 1 | Neur_chan_memb | 246 | 427 | 0.0 | 319.9 | 1.26117e-44 | 9.3e-41 | 140.2 |
| pfu_aug1.0_2978.1_23137.t1 | 2 | 2 | Neur_chan_LBD | 430 | 550 | 0.0 | 290.4 | 6.5e-26 | 4.8e-22 | 78.1 |
| pfu_aug1.0_2978.1_23137.t1 | 2 | 2 | Neur_chan_memb | 557 | 789 | 0.0 | 319.9 | 0.0 | 0.0 | 183.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2978.1_23137.t1 | gi|325296905|ref|NP_001191486.1| | non-alpha nicotinic acetylcholine receptor subunit precursor [Aplysia californica] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2978.1_23137.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2978.1_23137.t1 atgatttatatttcatccaaagttataattctaatgtttatgacgacatcctcggcagtatttcataaaggattggggag tgaggatgaagtgagacttgtccgagatttatttgagaggggttataacccattaatccgtccagtcaagaatatcagtg aatctatagaagtacaattcaatttggctctaagtcaacttattagcgtggatgagaaaaatcaagtaatgaagacaaat gtgtggctacagatgtattggaacgattatcagctacagtggaatcctaaggattatggcggtattagcacaatccgtat aagccacaataaagcttggagaccagatatagttctgtttaacaacgctgacgggacttacgaggtgagttacgagtcta acgttgttataggctctagttcccttatctattgggtacctcccgccatttacaaatcctcatgcaccattgatgtcaag tactttccatttgatgagcaaatttgtgagatgcattttggatcatggacgttcgacatcaaccagcttcacttttcctt ctacgaaaatatgagggctctggaccttacggattacttgaagagtggaacatgggatattattgaattccctgtcgata tcgtcaatcatacagacttgtctaaaaacgaaacaaaatccatttacatagccaaattcaagttgagaaggaaaaccctg ttttacctcgtaaacctgatcattccttgtgtgttgatttcactggttagtgtgtgcgtgttcgcgttaccagctgatgc aggggagaagatcacgctttgtatttcaattttactggcccttgttgtgtttttgttacttatttcaaggtcattacctc ctgcccttacaattcctctcatttcaaagtttctgttgtttacatttatcatcaacataatcgccatcggatcaactgtt tttgtgataaatcagaacttccggacgccgagaactcatgatatgcctgtttggatacgcacaatctttctcaaacattt acccacaatactgctgatgcgccgtccaaatcatatcgagaggtatcacgcaacagataaaaagaaggaaaaagaagaaa gcgccgaaaatgaaaataaaagcgaaatgaaccaactttgtaagaacctgttagaagagcaccttaaaaattgtgagatt cataattctacaaaggatttatcaagtgcagctgtcttacagactgagtctttagaccctacatatcaaagggcagtaaa tgctataagcgctgatggaaattacgaggtgacatacgagcccaacgttgtcttggtgatggacaagaattccgattaca atatttatcagattcctcccgcaatctttaaaagctcttgtgaaatcgatgtcaagtattttcccttcgatgaacaagtg tgtgaaatgaagtttggatcatggaccttccaggcagaccaactcaatttcacctatacaaagttcagaggacttgattt gacagattacctcaaaagtggaacatgggacctggtggattgtcccgcaaggatagaaatttgtgccgacgaaaatacga aacaagctaaagctctttacatcgcacagtttcgtattcgacgaaagacgcttttttacacagtaaacttgttgattcct tgtatgctaatttctttcgtcagtataagtgtttttctgctcccacccgattcctgtgaaaaaatcactttgattatttc cattctccttgccctggtggtgtttttgctccttatctctaaaatgttgccaccgtctttgacgattccccttatagcaa agtatttgatgtttaattttctgatgaacataattgccattgggtccacagtctttgtcataaacaggaactataggaca gcaaggacccatcgtatgccaaaatggacaagggtagttttcctgaactatttgccacggatattattcatgaagcgccc aaatcacgatgacagatggcaaaaatcaaatatgtccgacataactgcttctaaatcttcattggacgcacatagcaggc ttgattttgatatcaacgatgtaagattggacaaagaaagagatactaaacactccaaaagacccaaaaggaaaacaagt gatccggaaaatgatattacctccaactttcgtttatcaccggaaatggccgaagctaacgaagcgattgctttcatgag gcgccatctagagtgggaggataaatatgaaacggtacaagatgattggaaatacgttgccttggtgatagaccgtcttt tactgtatatatttctattagtgactgtttgtggtactttggccatcctatttcagtctcctttcatcttaatgaatgtg gatcaggatacacagatagaacatttgaagcttaagtacaatcttagcataactggcaaaccggcaggaccaattccgat acgaatagctccttgttaa |
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Protein
| Protein ID | pfu_aug1.0_2978.1_23137.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2978.1_23137.t1 MIYISSKVIILMFMTTSSAVFHKGLGSEDEVRLVRDLFERGYNPLIRPVKNISESIEVQFNLALSQLISVDEKNQVMKTN VWLQMYWNDYQLQWNPKDYGGISTIRISHNKAWRPDIVLFNNADGTYEVSYESNVVIGSSSLIYWVPPAIYKSSCTIDVK YFPFDEQICEMHFGSWTFDINQLHFSFYENMRALDLTDYLKSGTWDIIEFPVDIVNHTDLSKNETKSIYIAKFKLRRKTL FYLVNLIIPCVLISLVSVCVFALPADAGEKITLCISILLALVVFLLLISRSLPPALTIPLISKFLLFTFIINIIAIGSTV FVINQNFRTPRTHDMPVWIRTIFLKHLPTILLMRRPNHIERYHATDKKKEKEESAENENKSEMNQLCKNLLEEHLKNCEI HNSTKDLSSAAVLQTESLDPTYQRAVNAISADGNYEVTYEPNVVLVMDKNSDYNIYQIPPAIFKSSCEIDVKYFPFDEQV CEMKFGSWTFQADQLNFTYTKFRGLDLTDYLKSGTWDLVDCPARIEICADENTKQAKALYIAQFRIRRKTLFYTVNLLIP CMLISFVSISVFLLPPDSCEKITLIISILLALVVFLLLISKMLPPSLTIPLIAKYLMFNFLMNIIAIGSTVFVINRNYRT ARTHRMPKWTRVVFLNYLPRILFMKRPNHDDRWQKSNMSDITASKSSLDAHSRLDFDINDVRLDKERDTKHSKRPKRKTS DPENDITSNFRLSPEMAEANEAIAFMRRHLEWEDKYETVQDDWKYVALVIDRLLLYIFLLVTVCGTLAILFQSPFILMNV DQDTQIEHLKLKYNLSITGKPAGPIPIRIAPC |
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