Gene
| Gene Model ID | pfu_aug1.0_299.1_50772 |
|---|---|
| Locus | scaffold299.1 : 19016 ... 40685 : - |
| To GenomeBrowser | scaffold299.1:19016..40685 |
| Genes list of scaffold | scaffold299.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_299.1_50772.t1 | 8 | 1 | Cadherin | 1 | 89 | 0.0 | 457.7 | 2.3e-24 | 5.8e-21 | 74.5 |
| pfu_aug1.0_299.1_50772.t1 | 5 | 1 | Cadherin_2 | 38 | 59 | 2.0e-06 | 27.2 | 0.37 | 910.0 | -0.5 |
| pfu_aug1.0_299.1_50772.t1 | 8 | 2 | Cadherin | 105 | 191 | 0.0 | 457.7 | 5.8e-23 | 1.4e-19 | 70.0 |
| pfu_aug1.0_299.1_50772.t1 | 5 | 2 | Cadherin_2 | 139 | 163 | 2.0e-06 | 27.2 | 0.054 | 130.0 | 2.2 |
| pfu_aug1.0_299.1_50772.t1 | 8 | 3 | Cadherin | 207 | 295 | 0.0 | 457.7 | 4.8e-26 | 1.2e-22 | 79.9 |
| pfu_aug1.0_299.1_50772.t1 | 5 | 3 | Cadherin_2 | 239 | 269 | 2.0e-06 | 27.2 | 0.0045 | 11.0 | 5.6 |
| pfu_aug1.0_299.1_50772.t1 | 8 | 4 | Cadherin | 315 | 401 | 0.0 | 457.7 | 2.6e-21 | 6.3e-18 | 64.8 |
| pfu_aug1.0_299.1_50772.t1 | 5 | 4 | Cadherin_2 | 347 | 375 | 2.0e-06 | 27.2 | 0.00071 | 1.7 | 8.2 |
| pfu_aug1.0_299.1_50772.t1 | 8 | 5 | Cadherin | 418 | 448 | 0.0 | 457.7 | 3.1e-07 | 0.00076 | 19.6 |
| pfu_aug1.0_299.1_50772.t1 | 8 | 6 | Cadherin | 458 | 531 | 0.0 | 457.7 | 2.1e-12 | 5.1e-09 | 36.2 |
| pfu_aug1.0_299.1_50772.t1 | 8 | 7 | Cadherin | 550 | 635 | 0.0 | 457.7 | 3.0e-15 | 7.3e-12 | 45.3 |
| pfu_aug1.0_299.1_50772.t1 | 8 | 8 | Cadherin | 650 | 740 | 0.0 | 457.7 | 1.0e-25 | 2.5e-22 | 78.9 |
| pfu_aug1.0_299.1_50772.t1 | 5 | 5 | Cadherin_2 | 691 | 712 | 2.0e-06 | 27.2 | 0.062 | 150.0 | 2.0 |
| pfu_aug1.0_299.1_50772.t1 | 5 | 1 | EGF | 885 | 898 | 1.6e-15 | 56.7 | 0.2 | 490.0 | 0.8 |
| pfu_aug1.0_299.1_50772.t1 | 5 | 2 | EGF | 922 | 936 | 1.6e-15 | 56.7 | 0.0026 | 6.4 | 6.8 |
| pfu_aug1.0_299.1_50772.t1 | 5 | 3 | EGF | 944 | 970 | 1.6e-15 | 56.7 | 2.3e-06 | 0.0057 | 16.5 |
| pfu_aug1.0_299.1_50772.t1 | 5 | 4 | EGF | 979 | 1009 | 1.6e-15 | 56.7 | 7.4e-11 | 1.8e-07 | 30.9 |
| pfu_aug1.0_299.1_50772.t1 | 5 | 5 | EGF | 1017 | 1040 | 1.6e-15 | 56.7 | 8.6e-08 | 0.00021 | 21.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_299.1_50772.t1 | gi|321458298|gb|EFX69368.1| | hypothetical protein DAPPUDRAFT_329129 [Daphnia pulex] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_299.1_50772.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_299.1_50772.t1 atggaggacgctgtcttgggtacatctgtactaagagtatcagctacagacgtggaatcaggattgaacggccagattat gtacagtatagttgatggagacttgtacggccagtttgggatagggaccaataacgggactgtatttaccaccaaaaccc tggaccgggaaaccatggaaatctacaaccttactgtcatggcaaccgatctagcagagccctctggtgacaggcagacg acaataacaacggtgattatcaacgttcgggacgtcaatgactgtaatccggttttcaacacgccatcgttcatgcatgt acgggagaatactccggtcggtaccgtcgctttcacggtacaagcagacgacaaagacgaggggaactctggtaaagtag cctacagtatggcaacacaccctgctttctcaatcattccatcaacaggggaggttaaagtaaaagctcagcttgacagg gagatggttcaaaattacaccctccaagtaactgccaccgatcaagggacacaaccgctctcaactagccaaacaatagt cgtccacatcgaggacgaaaatgacaatccgccgaaatttacgcaaaattcgtattttacaacttgtccagaggatatag aaatcggaacgtccttattgcaagttactgcaaccgacagagatagcggcctcaacggcattgtgcgattctttataata gagggtgacgacaatgccgatttcagtatggaccccagtagtggagtattgcgcgttcagaaacagctggattacgagcg tcttcaatcttataccatcacggtccgagccgaggacagtggtcaacaacctagatattcttccgccaaaatctcaataa atatcattgatgtgaacgataataagcctgtgtttattgattcgccgttcaatgcgattgtgcgggaaaatatggatcaa cttccggtatttgttgcgcagctttctgcgcgtgacgacgattcaccgcaatacagtcgattaacatacggattacgtaa tggtgacagcgccatcttcagggtaaattctacaacaggagagattacttgtcacaaatctctggacagggagaccattg ccgaatacagacttgtagtggtcgccatcgattcaggtgccatccgcctcaccggaaccggaactgttaacgtcaaagtc caggatgtcaatgacaacaccccgcagtttgaccgaaactccgcctacatcggtcacgtggccgaaaacgagaatgtaca gactgaaatcctcactgtccatgctacagatgctgaccacggacataattctgaaattacgcataatggtcctgtctacg gagatgaaagacaatttgtgatcggagtgacagcccttgacagagatgtgggtagtaacggacaagtagagtacagcctt tccggtaccgatgccagcaagtttggtgttgatgctaaccgaggaatagttaaagccaaagaacagctcagtggctccac ctacaggtgccagatcacagcaagtgataagggaaaccctctcaagtcatcagtcgttgaccttacggtgaatttctcca gtgcagatgcagccaataatccatcatttaccagagtggatacacctgtcacagtgaacgagtctgtcagtatcggtacc accgtatcaaccgtgtccgcttcctctaccactggaagcaccgtcagatattacatcgcaggtggtaacatcaataacgc ctttgaggtagacgaaaactccggcatcatcagagtggcaggattggttgactatgagatgacgcacgacttccatttat ggatccaagcaaaggattctgggaatatgttcctggcggcctatagtgaggtggttgttaatgtcaatgatttgaacgat aatactccaagatttgatagtaacgtctatttggttgaaattgaggaggaagttatgatcggcacaaatgtgatccagat tttggcaactgatgcagatgatggtcagaacggtagagttggttatgttattgctgatggtaatattggtggtgccttta acattgatgcggttagtggacgaataaaaactgccagccgattggacagagagaatcaccaacactatagccttgttatc aaagcaacagatcagggtgagattccactaactggttcaacaacagtcagaattacactgaaagatatcaacgacaacga accaaagttctcccagattttcagtgctcagtcctatcctttgaccatcaatggcagcgatggtactcgcagcgtcttgt acacgatcaatgcaaatttcatacaagttacagactctgctctagacaatatggttattcttcaagtatcctccattcaa gctgggacattcatgcttacaaaattcgccaacttcaaaacttctcttgataatttggactctagtaaggcaatgaccat ctttaacatcattgatctgagtggatcctccgatgtcttaatttacataggcgccagggatacctctgggaacatcatca cacatgatacactgaaacagttgctcctgtcaaagaaatcaattgttgagggcaattcggatattttaatctccaaaata ggatattctgtgtgcaatcaatcgtcttgtaactcaggagagtgtcttcgtcatgtatccattgggagtggttttggatt cttggattctcctaatttcgtcctttcatctcctgaacttgtacctgacttcaagtgcaactgtcctccacagttttctg gatctcgttgtgaatttcctgtcaatccatgtggaagtggcttctgcgagaatggaggaacatgcttaaacaatgcgaga tgtgattgccctccgggctgggagggtgatttctgccaaacggacaagaaagaatgtgatgcactaccatgcaaaaatgg agccacttgtcaaaacactctgggttcttattattgcacttgcaaagatgggttcactggacagaactgcgagactggct ctaacaactgcgcatcgaacccttgtaggaatggaggcgtttgcagaaacgaacttaatggttatacgtgcaattgccca tacatctactgggaagttcagcatagtagaacagactctgaacatagtcttgccagtcatcatagtaggagctcaacaag ctcctcagtgcctcgaactgccctgcctaacgggcacatgaaacatccacggcatcaccatcatcatcatcaacgtgaat atttcaagcccaattcccagcaaaaaggtctgacgttagaggaaattgagaaactaaatgctcgacctcaaaggccgagc cccgttagcatgttggaggcagtgtcatcgtcgtctgaaggaaatcatcgtcatcgaaataaccatcttaatcccgatca aatgatgttagttccgtcagattccagttcagatgatagtgccaatgattctttcacgtgctctgaatttgaatatgaaa atgacaaaggcggaagaggtgactttaatcctagtgcaatgattttctctaaactcgctgaagttgacaatgaaaacgag gactcaaatttgagtccaaagaaaattataaactccgatgggctggactcaaacggagggtcatatgcaagtactgtggg gtcatcggaaggtggtgaaaataaagacggcaagcctataaatgggcagttcaactgggactatttattaaactggggtc ccagtttcgagaagctagtgggcgtatttcaagatattgcctcgttaccggaaggtgacgaggctgtagccaattcagaa attaccgataatagagaagagtatgtttaa |
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Protein
| Protein ID | pfu_aug1.0_299.1_50772.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_299.1_50772.t1 MEDAVLGTSVLRVSATDVESGLNGQIMYSIVDGDLYGQFGIGTNNGTVFTTKTLDRETMEIYNLTVMATDLAEPSGDRQT TITTVIINVRDVNDCNPVFNTPSFMHVRENTPVGTVAFTVQADDKDEGNSGKVAYSMATHPAFSIIPSTGEVKVKAQLDR EMVQNYTLQVTATDQGTQPLSTSQTIVVHIEDENDNPPKFTQNSYFTTCPEDIEIGTSLLQVTATDRDSGLNGIVRFFII EGDDNADFSMDPSSGVLRVQKQLDYERLQSYTITVRAEDSGQQPRYSSAKISINIIDVNDNKPVFIDSPFNAIVRENMDQ LPVFVAQLSARDDDSPQYSRLTYGLRNGDSAIFRVNSTTGEITCHKSLDRETIAEYRLVVVAIDSGAIRLTGTGTVNVKV QDVNDNTPQFDRNSAYIGHVAENENVQTEILTVHATDADHGHNSEITHNGPVYGDERQFVIGVTALDRDVGSNGQVEYSL SGTDASKFGVDANRGIVKAKEQLSGSTYRCQITASDKGNPLKSSVVDLTVNFSSADAANNPSFTRVDTPVTVNESVSIGT TVSTVSASSTTGSTVRYYIAGGNINNAFEVDENSGIIRVAGLVDYEMTHDFHLWIQAKDSGNMFLAAYSEVVVNVNDLND NTPRFDSNVYLVEIEEEVMIGTNVIQILATDADDGQNGRVGYVIADGNIGGAFNIDAVSGRIKTASRLDRENHQHYSLVI KATDQGEIPLTGSTTVRITLKDINDNEPKFSQIFSAQSYPLTINGSDGTRSVLYTINANFIQVTDSALDNMVILQVSSIQ AGTFMLTKFANFKTSLDNLDSSKAMTIFNIIDLSGSSDVLIYIGARDTSGNIITHDTLKQLLLSKKSIVEGNSDILISKI GYSVCNQSSCNSGECLRHVSIGSGFGFLDSPNFVLSSPELVPDFKCNCPPQFSGSRCEFPVNPCGSGFCENGGTCLNNAR CDCPPGWEGDFCQTDKKECDALPCKNGATCQNTLGSYYCTCKDGFTGQNCETGSNNCASNPCRNGGVCRNELNGYTCNCP YIYWEVQHSRTDSEHSLASHHSRSSTSSSVPRTALPNGHMKHPRHHHHHHQREYFKPNSQQKGLTLEEIEKLNARPQRPS PVSMLEAVSSSSEGNHRHRNNHLNPDQMMLVPSDSSSDDSANDSFTCSEFEYENDKGGRGDFNPSAMIFSKLAEVDNENE DSNLSPKKIINSDGLDSNGGSYASTVGSSEGGENKDGKPINGQFNWDYLLNWGPSFEKLVGVFQDIASLPEGDEAVANSE ITDNREEYV |
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