Gene
| Gene Model ID | pfu_aug1.0_299.1_50773 |
|---|---|
| Locus | scaffold299.1 : 40820 ... 47715 : - |
| To GenomeBrowser | scaffold299.1:40820..47715 |
| Genes list of scaffold | scaffold299.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_299.1_50773.t1 | 3 | 1 | Cadherin | 7 | 21 | 1.4e-33 | 114.9 | 0.41 | 2000.0 | -1.0 |
| pfu_aug1.0_299.1_50773.t1 | 3 | 2 | Cadherin | 35 | 117 | 1.4e-33 | 114.9 | 1.4e-20 | 6.9e-17 | 61.4 |
| pfu_aug1.0_299.1_50773.t1 | 3 | 3 | Cadherin | 132 | 195 | 1.4e-33 | 114.9 | 1.0e-17 | 5.1e-14 | 52.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_299.1_50773.t1 | gi|241148648|ref|XP_002405854.1| | protocadherin-16, putative [Ixodes scapularis] | 9.0e-34 |
Transcript
| Transcript ID | pfu_aug1.0_299.1_50773.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_299.1_50773.t1 atggatgcgctcgatcaacctgcaagttccgacgtggtcacggtcaccatcttggaccaaaatgatacaccacccaagtt caacaacaacagctatacagaggtgctgtcagaaggtatctccactggctcagaagtactcaaactgtctgtaactgacc ctgatactcaagggggaaccaccaacatccggatcaccagcggaaatgaagacaacactttcacggtagacaactctggt tccataaaaattgtcagacagctagatcgagaaagtcatcctcagtacagactgaaacttgaagcgacagacggacagaa cactgcccaagccactgtcactttcatcgtgacagacaccaacgataacacaccgacattcacccagactttctactcct tcaacgttccagaagattcaccaattggcaccattttggcacgtgttgaagcagaggatccagacgaaggtgcaaatggc atagttacgtatagtatgacgtcatcgtgggcacaggatatcttcgaactcaatccaaacaccggggtcattgttttagc caatcgggtggattttgaacagtgtgtcacttgtactggaattttcacaaatctttgtgtccgaaaataa |
|
Protein
| Protein ID | pfu_aug1.0_299.1_50773.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_299.1_50773.t1 MDALDQPASSDVVTVTILDQNDTPPKFNNNSYTEVLSEGISTGSEVLKLSVTDPDTQGGTTNIRITSGNEDNTFTVDNSG SIKIVRQLDRESHPQYRLKLEATDGQNTAQATVTFIVTDTNDNTPTFTQTFYSFNVPEDSPIGTILARVEAEDPDEGANG IVTYSMTSSWAQDIFELNPNTGVIVLANRVDFEQCVTCTGIFTNLCVRK |
|