Gene
| Gene Model ID | pfu_aug1.0_300.1_50779 |
|---|---|
| Locus | scaffold300.1 : 41165 ... 54565 : - |
| To GenomeBrowser | scaffold300.1:41165..54565 |
| Genes list of scaffold | scaffold300.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_300.1_50779.t1 | 3 | 1 | RCC1 | 4 | 46 | 1.2e-29 | 102.2 | 1.0e-10 | 7.6e-07 | 29.2 |
| pfu_aug1.0_300.1_50779.t1 | 4 | 1 | RCC1_2 | 35 | 63 | 1.2e-11 | 43.8 | 5.3e-08 | 0.00039 | 19.9 |
| pfu_aug1.0_300.1_50779.t1 | 3 | 2 | RCC1 | 50 | 103 | 1.2e-29 | 102.2 | 7.3e-17 | 5.4e-13 | 48.9 |
| pfu_aug1.0_300.1_50779.t1 | 4 | 2 | RCC1_2 | 91 | 114 | 1.2e-11 | 43.8 | 9.3e-07 | 0.0069 | 15.9 |
| pfu_aug1.0_300.1_50779.t1 | 4 | 3 | RCC1_2 | 206 | 216 | 1.2e-11 | 43.8 | 0.0013 | 9.5 | 5.9 |
| pfu_aug1.0_300.1_50779.t1 | 3 | 3 | RCC1 | 207 | 252 | 1.2e-29 | 102.2 | 2.4e-08 | 0.00018 | 21.6 |
| pfu_aug1.0_300.1_50779.t1 | 4 | 4 | RCC1_2 | 241 | 253 | 1.2e-11 | 43.8 | 0.00014 | 1.0 | 9.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_300.1_50779.t1 | gi|260781262|ref|XP_002585738.1| | hypothetical protein BRAFLDRAFT_111359 [Branchiostoma floridae] | 2.0e-33 |
Transcript
| Transcript ID | pfu_aug1.0_300.1_50779.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_300.1_50779.t1 atgaaacttggtaggttaggggtagattcaactggcacagaattagaaccaaggagagtaactctattcgaaaaccaagc aaagggcggcaatcctcctgtggcaggggtagcttgcggagggcgccacacaatggtctggttgaccaatggaaatgtct tcagttttggcaataattactacgctcagctaggttatgattttagggaggaaacatacaaggaaaatcagacgaaacca acattgctgaagtttctagcatatcgccctgttgtacaagtttcttgtggagagaaacactcagtgttcagatttcaaga tggtgccatagcttgtgttggaacgcagaggggcattttcgtcacgattgaattacccatagattttcttcaggtcaact ctactcacagatacattgatgatgtgccatcaattaataatccaggatttgcggattaccttagcacactctatccattg agaaaggaggtgatctctaaccggactcggttaaagcatccagtgactttccttcgccccttgcctaaatgtattcatat tgcaattcatacactattccggatcaagcttactctacaccgacgtttttctgaggataacggtgaggtatacgtgtggg gatatggcaaggcaattggtaacaagaaatctgacgttttgtccccggaactgatacaaataaatactcatagcatctgg caggtggcaggagggtcatctcatagtgtttttcttacaggtagggattctaatgatcagttttaccaatatcggaaaag tacatgtagcagcagaaatatcaaacgaaattaa |
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Protein
| Protein ID | pfu_aug1.0_300.1_50779.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_300.1_50779.t1 MKLGRLGVDSTGTELEPRRVTLFENQAKGGNPPVAGVACGGRHTMVWLTNGNVFSFGNNYYAQLGYDFREETYKENQTKP TLLKFLAYRPVVQVSCGEKHSVFRFQDGAIACVGTQRGIFVTIELPIDFLQVNSTHRYIDDVPSINNPGFADYLSTLYPL RKEVISNRTRLKHPVTFLRPLPKCIHIAIHTLFRIKLTLHRRFSEDNGEVYVWGYGKAIGNKKSDVLSPELIQINTHSIW QVAGGSSHSVFLTGRDSNDQFYQYRKSTCSSRNIKRN |
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