Gene
| Gene Model ID | pfu_aug1.0_3001.1_23140 |
|---|---|
| Locus | scaffold3001.1 : 38408 ... 57375 : - |
| To GenomeBrowser | scaffold3001.1:38408..57375 |
| Genes list of scaffold | scaffold3001.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3001.1_23140.t1 | 2 | 1 | Patched | 46 | 297 | 7.0e-12 | 44.1 | 2.1e-14 | 1.0e-10 | 40.2 |
| pfu_aug1.0_3001.1_23140.t1 | 1 | 1 | Sterol-sensing | 168 | 297 | 1.3e-11 | 44.2 | 4.6e-15 | 2.3e-11 | 43.3 |
| pfu_aug1.0_3001.1_23140.t1 | 2 | 2 | Patched | 265 | 329 | 7.0e-12 | 44.1 | 0.0002 | 0.98 | 7.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3001.1_23140.t1 | gi|221110205|ref|XP_002169115.1| | 2.00386e-43 |
Transcript
| Transcript ID | pfu_aug1.0_3001.1_23140.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3001.1_23140.t1 atgacgtcactgttaaaatacgcagtttcattgagaagtaacaatgaaaagaatcagagtgcagatcctcttgacattcc cttagatgaaagacaaatgtcatctttgataagcaatagcacagatgcatctcaagagttttccaataagtccttgggat ggcttgaggtaggagttgaatactggctttcaactacttttatggacaacaataagaaggacgctataaaatataacaat cttctagggtcaaggatagtaacaaacgaacggtcaaatatcagtgattcaaatgagtcacatctatttcgcacggagct tcagtacatcgcagtgcggattgggaccttcatgactattcacaatttgtcatttatcgaagggaatgagatttatgata gatatgaagcactgatttcaaatataacattgcttacgtatggcttagagggccttgctatcagccttggaatagcttta ccggtccttgtagtgtccagtatgaatatttacattggacttatagccactcttgtgattggcctggtcatcacgagcgc cataggactcctaccactcacagggcacggactaggggtgatcgagtctatcaatctatatatggtcgtgggattatctg tggattatgtagtccattttgcagaagcgtacagattttcatctcatcctgaccggaaaaggagagttggttccatgcta gaaaatatgggtctgtccgtcacatccggtgcattgacgacgtttggagcggcgtcttttatgctttgggcagatatacg attgatttctcagtttgggttgtttgtgatgaccatcatatctttgtcctacatttattccctatttggattctctgcag tcatggcactttttggaccggaaggagatactggaaatctttgcgtcataggaagaaacttcggtcgacttatatttagt accaagaaagatgctaaggacaatggcatgaacaaagaaagacaagagaaggaggttacgcagaatttgtcaagtattgc tgtactggaagtgaggtag |
|
Protein
| Protein ID | pfu_aug1.0_3001.1_23140.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3001.1_23140.t1 MTSLLKYAVSLRSNNEKNQSADPLDIPLDERQMSSLISNSTDASQEFSNKSLGWLEVGVEYWLSTTFMDNNKKDAIKYNN LLGSRIVTNERSNISDSNESHLFRTELQYIAVRIGTFMTIHNLSFIEGNEIYDRYEALISNITLLTYGLEGLAISLGIAL PVLVVSSMNIYIGLIATLVIGLVITSAIGLLPLTGHGLGVIESINLYMVVGLSVDYVVHFAEAYRFSSHPDRKRRVGSML ENMGLSVTSGALTTFGAASFMLWADIRLISQFGLFVMTIISLSYIYSLFGFSAVMALFGPEGDTGNLCVIGRNFGRLIFS TKKDAKDNGMNKERQEKEVTQNLSSIAVLEVR |
|