Gene
| Gene Model ID | pfu_aug1.0_3002.1_59102 |
|---|---|
| Locus | scaffold3002.1 : 38314 ... 41805 : - |
| To GenomeBrowser | scaffold3002.1:38314..41805 |
| Genes list of scaffold | scaffold3002.1 |
| Synonym | pfu_aug2.0_3.1_10020 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3002.1_59102.t1 | 1 | 1 | Ribosomal_L37 | 49 | 123 | 6.6e-14 | 51.2 | 7.2e-18 | 1.1e-13 | 50.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3002.1_59102.t1 | gi|110756575|ref|XP_001122212.1| | PREDICTED: 39S ribosomal protein L54, mitochondrial [Apis mellifera] | 2.0e-16 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3002.1_59102.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3002.1_59102.t1 atgtcatcggttctgttactgcccagcgtcctgagggcagtgcacacagggaagggcacagtaggatgtatgtaccagtg tgtggcagggtatgctgccaaaaagacaggccctgttctgaaaaagaaaaagaagttctttgacacagaaacagatcctg aaaaactttgtaacaatctatgtggaggaaatatttacaaggaaggggaggatccaaaactgggtccagattctgtgtat cctcattggatatgggatcttagaacggagaaaaaacaagtgccgataaaagatttgtctccagacacatgggaatactg gagaagtgtgaagaaaatagcccgaaagaggaagaacttttacatgaaaaagtacaaagtatag |
|
Protein
| Protein ID | pfu_aug1.0_3002.1_59102.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3002.1_59102.t1 MSSVLLLPSVLRAVHTGKGTVGCMYQCVAGYAAKKTGPVLKKKKKFFDTETDPEKLCNNLCGGNIYKEGEDPKLGPDSVY PHWIWDLRTEKKQVPIKDLSPDTWEYWRSVKKIARKRKNFYMKKYKV |
|