Gene
| Gene Model ID | pfu_aug1.0_3016.1_16004 |
|---|---|
| Locus | scaffold3016.1 : 30846 ... 37824 : + |
| To GenomeBrowser | scaffold3016.1:30846..37824 |
| Genes list of scaffold | scaffold3016.1 |
| Synonym | pfu_aug2.0_815.1_17861 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3016.1_16004.t1 | 2 | 1 | CDC48_N | 1 | 62 | 4.3e-18 | 65.0 | 1.4e-19 | 6.2e-17 | 61.3 |
| pfu_aug1.0_3016.1_16004.t1 | 1 | 1 | CDC48_2 | 82 | 145 | 7.4e-12 | 44.7 | 3.4e-14 | 1.5e-11 | 43.7 |
| pfu_aug1.0_3016.1_16004.t1 | 2 | 2 | CDC48_N | 100 | 127 | 4.3e-18 | 65.0 | 0.81 | 360.0 | 1.1 |
| pfu_aug1.0_3016.1_16004.t1 | 1 | 1 | RuvB_N | 210 | 244 | 3.9e-06 | 26.0 | 1.8e-08 | 8.2e-06 | 25.0 |
| pfu_aug1.0_3016.1_16004.t1 | 1 | 1 | AAA | 211 | 344 | 0.0 | 162.5 | 0.0 | 0.0 | 162.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3016.1_16004.t1 | gi|54020867|ref|NP_001005677.1| | transitional endoplasmic reticulum ATPase [Xenopus (Silurana) tropicalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3016.1_16004.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3016.1_16004.t1 atggatgagctgcagttatttagaggtgacacagtattgctgaagggaaaacgcagaagagataccgtttgtatagtact gtcagatgacactgtaaccgacgacaaaatcagaattaacagatgtgtcaggaataatttacgtgtcagacttggagatg tcgtaagtgttcaagcctgtccagatgtgaagtatggaaaacgaattcatgttcttcccatagatgacactgtagagggt ctgacaggaaacatatttgaggtatatctgaagccatatttcctggaagcatacagaccgatccgtaaaggtgacatatt cttggtgagaggaggaatgcgggcggtagaattcaaagtcatagagacagaccccagtccatactgtattgtcgcccctg acacagtaatacattgtgaaggagaacctgtcaaacgagaggaggaggaggaagctctaaatgaagtagggtatgatgat ataggaggctgtagaaaacagctggcacagatcaaagaaatggtagaactccctctcagacatccacaactcttcaaagc cattggtgtcaagtatccagtggaacatccagagaagttcctaaaattcggaatgactccatcaaaaggagtgttgtttt atggtcccccaggatgtggtaaaactctgctggccaaagccattgctaacgagtgtcaggctaacttcatctcaatcaaa ggtccagaacttttgaccatgtggtttggagaatcagaagctaatgtcagggacatttttgataaagcaagatctgctgc gccatgtgtcttgttctttgatgagttagactccattgccaaggccagaggtggaaatgtgggagacggtggtggtgctg ctgacagagttataaaccagcttctgacagaaatggacggaatgagtgccaagaaaaatgtatttatcattggagccaca aatagacctgatatcatagatccagccattttacgtccaggccgtcttgatcaactgatctacattcctttaccagatga aaagtcacgcatgtccatcgtgaaggctaatctcagaaagtcacctgtatcagatgtaagttctgactag |
|
Protein
| Protein ID | pfu_aug1.0_3016.1_16004.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3016.1_16004.t1 MDELQLFRGDTVLLKGKRRRDTVCIVLSDDTVTDDKIRINRCVRNNLRVRLGDVVSVQACPDVKYGKRIHVLPIDDTVEG LTGNIFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEEALNEVGYDD IGGCRKQLAQIKEMVELPLRHPQLFKAIGVKYPVEHPEKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK GPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDGGGAADRVINQLLTEMDGMSAKKNVFIIGAT NRPDIIDPAILRPGRLDQLIYIPLPDEKSRMSIVKANLRKSPVSDVSSD |
|