Gene
| Gene Model ID | pfu_aug1.0_3028.1_23147 |
|---|---|
| Locus | scaffold3028.1 : 25056 ... 31889 : + |
| To GenomeBrowser | scaffold3028.1:25056..31889 |
| Genes list of scaffold | scaffold3028.1 |
| Synonym | pfu_aug2.0_49.1_30085 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3028.1_23147.t1 | 2 | 1 | LIM | 31 | 88 | 3.4e-32 | 110.3 | 1.6e-18 | 1.2e-14 | 54.0 |
| pfu_aug1.0_3028.1_23147.t1 | 2 | 2 | LIM | 94 | 149 | 3.4e-32 | 110.3 | 4.9e-21 | 3.6e-17 | 62.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3028.1_23147.t1 | gi|29469078|ref|NP_817093.1| | LIM domain only 4a [Danio rerio] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3028.1_23147.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3028.1_23147.t1 atgactaatggaagtgaagaaagttccatgatggtaaacggaaatcttagcggaagtgacgtcagctttaatggtggcgc cgtcaaagcatgcggaggttgcggaggaaggatccatgataggtttctgttacacgctatggaccgatattggcatacag aatgtctcaagtgctcttgttgtcagacaacgctagaacagttgggaacttgcttcgctcggtcgggaatgatactgtgc aaaaacgattatatgagactttttggttccggcggatcatgcgcttcctgtggacaaaatattcctgcgcacgaaatggt gatgcgtgtccatggcaacacttatcatttaaagtgctttacttgtgtggcgtgcaatactcagttgacacccggaaatc ggtatgccattataaatggtaacattgtttgtgaacaggactacccgaaagtgaccaaagcccaggtcggcggaagttca cggaattccacgaagatacacggaatgatgacaaaaatttga |
|
Protein
| Protein ID | pfu_aug1.0_3028.1_23147.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3028.1_23147.t1 MTNGSEESSMMVNGNLSGSDVSFNGGAVKACGGCGGRIHDRFLLHAMDRYWHTECLKCSCCQTTLEQLGTCFARSGMILC KNDYMRLFGSGGSCASCGQNIPAHEMVMRVHGNTYHLKCFTCVACNTQLTPGNRYAIINGNIVCEQDYPKVTKAQVGGSS RNSTKIHGMMTKI |
|