Gene
Gene Model ID | pfu_aug1.0_3028.1_23147 |
---|---|
Locus | scaffold3028.1 : 25056 ... 31889 : + |
To GenomeBrowser | scaffold3028.1:25056..31889 |
Genes list of scaffold | scaffold3028.1 |
Synonym | pfu_aug2.0_49.1_30085 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_3028.1_23147.t1 | 2 | 1 | LIM | 31 | 88 | 3.4e-32 | 110.3 | 1.6e-18 | 1.2e-14 | 54.0 |
pfu_aug1.0_3028.1_23147.t1 | 2 | 2 | LIM | 94 | 149 | 3.4e-32 | 110.3 | 4.9e-21 | 3.6e-17 | 62.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_3028.1_23147.t1 | gi|29469078|ref|NP_817093.1| | LIM domain only 4a [Danio rerio] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_3028.1_23147.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3028.1_23147.t1 atgactaatggaagtgaagaaagttccatgatggtaaacggaaatcttagcggaagtgacgtcagctttaatggtggcgc cgtcaaagcatgcggaggttgcggaggaaggatccatgataggtttctgttacacgctatggaccgatattggcatacag aatgtctcaagtgctcttgttgtcagacaacgctagaacagttgggaacttgcttcgctcggtcgggaatgatactgtgc aaaaacgattatatgagactttttggttccggcggatcatgcgcttcctgtggacaaaatattcctgcgcacgaaatggt gatgcgtgtccatggcaacacttatcatttaaagtgctttacttgtgtggcgtgcaatactcagttgacacccggaaatc ggtatgccattataaatggtaacattgtttgtgaacaggactacccgaaagtgaccaaagcccaggtcggcggaagttca cggaattccacgaagatacacggaatgatgacaaaaatttga |
Protein
Protein ID | pfu_aug1.0_3028.1_23147.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3028.1_23147.t1 MTNGSEESSMMVNGNLSGSDVSFNGGAVKACGGCGGRIHDRFLLHAMDRYWHTECLKCSCCQTTLEQLGTCFARSGMILC KNDYMRLFGSGGSCASCGQNIPAHEMVMRVHGNTYHLKCFTCVACNTQLTPGNRYAIINGNIVCEQDYPKVTKAQVGGSS RNSTKIHGMMTKI |