Gene
| Gene Model ID | pfu_aug1.0_3031.1_44550 |
|---|---|
| Locus | scaffold3031.1 : 36295 ... 41365 : - |
| To GenomeBrowser | scaffold3031.1:36295..41365 |
| Genes list of scaffold | scaffold3031.1 |
| Synonym | pfu_aug2.0_797.1_24412 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | frizzled-4 |
| Description | NCBI BLASTP hit to ref|XP_002730495.1|[Saccoglossus kowalevskii] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3031.1_44550.t1 | 1 | 1 | Fz | 12 | 126 | 3.5e-33 | 114.4 | 4.7e-37 | 3.5e-33 | 114.4 |
| pfu_aug1.0_3031.1_44550.t1 | 1 | 1 | Frizzled | 194 | 498 | 0.0 | 426.4 | 0.0 | 0.0 | 422.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3031.1_44550.t1 | gi|260834485|ref|XP_002612241.1| | hypothetical protein BRAFLDRAFT_269437 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3031.1_44550.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3031.1_44550.t1 atgcccgcgcacagtaccgaagtggtcagacaatgtgatcccatcaaaatcgaaatgtgcaaaggacttggttataataa cacaggtatgccgaatctggtaggtcacatggttcaacaagacgctgaattacaattacatactttcatgccgcttattc aatacggctgctcaaaacaattgaaatttttcttgtgttctgtctatgttcctatgtgtacagagaaagtcgtagaccca attggtccgtgtagacctatgtgtctaagtgttcagcgacgctgtcaacccgtactacacgagtttggctacccatggcc actggctttaaactgttcgaaatttccacccaaaaatgatcagaaccacatgtgtatggatggtcccgggggagatgacg gtcctgacaccccgaagcctccaccccgtccgtgggacaataccaaacatcgtccaagtaaacctgaccaaagtcacgac tcctcgcaagaaagctgcgacaagttccgtcactctcatatgtacatctacatcaatagaactgaacgttgtgctcttaa atgttccgaaaatgatgcttttaccgccgaggacaaatattttgctgacatttggatgtccatttgggctgcattatgct tcgtttcgactcttttcacagtattaacattcgtcatcgattctcagcgatttagataccccgagaggcccatcattttt ctatccatgtgttttaccatctatagtattgcttttatcgtccggctgatcgctggcagggactctatcgcgtgcgacat tgacagtcccagtggaaaatccattttaattcaagagggactggaaaatactgactgtgccattgtgttcttgttgcttt actatttcggcacagctagtgctctatggtgggtcatcttgacgataacatggttcctttctgctggactgaagtggggc cacgaagcaattcaagttcacagtagttactttcatttggccgcatgggccttgccggccattcagaccattgtaatatt ggtcatgagagacgtcgatgctgacgaactaacaggaatctgttacgttggcaaccaaaacactcaaacactcttgggct ttgcaatagcccctcttctagtctacctctgcgttggaatttccttcctatccgctggtttcttagctctgttccgaatc cgtaaaaagataaaggaggatggagtgaaaacagacaaattagaagtattaatggttcgaattggaatattttccgttct ttatactgtaccagccacttgtgtgattggatgtttattttacgaatatgccaatagagactcgtggtatatgaaagacg tcgaagcatcgtcgccaaaaattgaaattttcatgttaaaagtgtttatgtcacttgtggttggcataactagtggtatg tggatttggtccacaaaaactgtgaattcctggcgaaactttgctgggaaattggcttttaaaaagcaagaacgaaaagg aatagaatacaatagtgttcagtttcaccactatcaaccaattccaatcaagcaagtgaatagggctatacgggctgaga aatccaaaccaaaaagaacgaaatatgacagtgaaacaatcgtctaa |
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Protein
| Protein ID | pfu_aug1.0_3031.1_44550.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3031.1_44550.t1 MPAHSTEVVRQCDPIKIEMCKGLGYNNTGMPNLVGHMVQQDAELQLHTFMPLIQYGCSKQLKFFLCSVYVPMCTEKVVDP IGPCRPMCLSVQRRCQPVLHEFGYPWPLALNCSKFPPKNDQNHMCMDGPGGDDGPDTPKPPPRPWDNTKHRPSKPDQSHD SSQESCDKFRHSHMYIYINRTERCALKCSENDAFTAEDKYFADIWMSIWAALCFVSTLFTVLTFVIDSQRFRYPERPIIF LSMCFTIYSIAFIVRLIAGRDSIACDIDSPSGKSILIQEGLENTDCAIVFLLLYYFGTASALWWVILTITWFLSAGLKWG HEAIQVHSSYFHLAAWALPAIQTIVILVMRDVDADELTGICYVGNQNTQTLLGFAIAPLLVYLCVGISFLSAGFLALFRI RKKIKEDGVKTDKLEVLMVRIGIFSVLYTVPATCVIGCLFYEYANRDSWYMKDVEASSPKIEIFMLKVFMSLVVGITSGM WIWSTKTVNSWRNFAGKLAFKKQERKGIEYNSVQFHHYQPIPIKQVNRAIRAEKSKPKRTKYDSETIV |
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