Gene
| Gene Model ID | pfu_aug1.0_30310.1_12012 |
|---|---|
| Locus | scaffold30310.1 : 1 ... 7171 : - |
| To GenomeBrowser | scaffold30310.1:1..7171 |
| Genes list of scaffold | scaffold30310.1 |
| Synonym | pfu_aug2.0_797.1_24415 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_30310.1_12012.t1 | 1 | 1 | Profilin | 12 | 124 | 5.7e-22 | 78.0 | 5.0e-26 | 7.5e-22 | 77.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_30310.1_12012.t1 | gi|260808135|ref|XP_002598863.1| | hypothetical protein BRAFLDRAFT_90112 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_30310.1_12012.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_30310.1_12012.t1 gatgcagtgaaaatgaaccagctgcagaatcttctgcacgactccctgatcgccacagaccatgtacatcactgtgcaat cgtcaggagaaaagactgtaacatcagggcaagctctgtggggttcaatctataccatgaccaggttcagatgttactag acgctttcaagaatcccccacagactcgggaagagggaatctattttgaagacagacagtacaaatgtgtacgtgctgac aaaaactccatctatggaaaatgtgagaagagaggattaatactagtaaagactttatctatgttgatcatagctacata cacagaaaacatgtacccaagtgtctgtgtggaagccgtggaaaaattagtaattgtcttctttattttacatggtaact gtcccctgctgtag |
|
Protein
| Protein ID | pfu_aug1.0_30310.1_12012.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_30310.1_12012.t1 DAVKMNQLQNLLHDSLIATDHVHHCAIVRRKDCNIRASSVGFNLYHDQVQMLLDAFKNPPQTREEGIYFEDRQYKCVRAD KNSIYGKCEKRGLILVKTLSMLIIATYTENMYPSVCVEAVEKLVIVFFILHGNCPLL |
|