Gene
| Gene Model ID | pfu_aug1.0_3035.1_59110 |
|---|---|
| Locus | scaffold3035.1 : 10823 ... 34675 : - |
| To GenomeBrowser | scaffold3035.1:10823..34675 |
| Genes list of scaffold | scaffold3035.1 |
| Synonym | pfu_aug2.0_618.1_27595 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | PFMG10 like |
| Description | reciprocal BLASTN best hit to DQ116437.1 Pinctada fucata mantle protein 10 (MG10) mRNA |
| mRNA evidence |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3035.1_59110.t1 | gi|353558699|sp|P86948.1|MP_PINMA | Mantle protein [Pinctada maxima] | 5.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| egg-Dshape | 5 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 4 |
| adductorMuscle | 1 |
| mantle | 13 |
| mantleEdge | 7 |
| mantlePallium | 1 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_3035.1_59110.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3035.1_59110.t1 atgctggcggttcttctgttctccgccctcgtgggtactgctttttcacagggctatcccggaccaggcaaggacgtgaa aattgttgcacatcccaaggctgtagaacaccaagaagcgaggcacgtccaccatagagaaactgtgaaagtgcccattg acgttcctgtaccgcagatcgaaaccagacatgtggtcaaatacaaggaaaatagaatattcagaccaaagcccgttgtc aaagaacacgttcaaataattgaagaaaaacgaccattcccagtcgatcaacatgttgtccagaagattccaaaaccagt cgtagaagttgttaagaaaccagttgtagttgtccagaacattcatcatcacaaaaaacaagttgtaggagtgccacatg ttaaaacggtcgcagaagtggtaccaaatgttgttcaccagaaggtcacataccccgttggaaaaggcggttatgcagga ggaccgtgtaaaaaaatgaaattatttcgttcccttcgaaggaacgaaataatatttcgagggaatgaagtaataattcg aaggaacgaaattatatttcgagggaatgaagtaatagtttatgggaacgaaaaaaaatttcgagggaacgaaatagtgt ttcgtaggaacgaaatgatatttcgaaggaatgaaataatatttcgagggtcgttctgtccaagtaggaggaggccctgt accattgccagaaaagttttaataactgaacctcctcttaggttgaagataaacccattccggagattggcaacttcagc ttctcttttaatagttcttctactattggacaatagatgtaaataa |
|
Protein
| Protein ID | pfu_aug1.0_3035.1_59110.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3035.1_59110.t1 MLAVLLFSALVGTAFSQGYPGPGKDVKIVAHPKAVEHQEARHVHHRETVKVPIDVPVPQIETRHVVKYKENRIFRPKPVV KEHVQIIEEKRPFPVDQHVVQKIPKPVVEVVKKPVVVVQNIHHHKKQVVGVPHVKTVAEVVPNVVHQKVTYPVGKGGYAG GPCKKMKLFRSLRRNEIIFRGNEVIIRRNEIIFRGNEVIVYGNEKKFRGNEIVFRRNEMIFRRNEIIFRGSFCPSRRRPC TIARKVLITEPPLRLKINPFRRLATSASLLIVLLLLDNRCK |
|