Gene
| Gene Model ID | pfu_aug1.0_3037.1_16009 |
|---|---|
| Locus | scaffold3037.1 : 39254 ... 58985 : - |
| To GenomeBrowser | scaffold3037.1:39254..58985 |
| Genes list of scaffold | scaffold3037.1 |
| Synonym | pfu_aug2.0_788.1_27783 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3037.1_16009.t1 | 1 | 1 | Exo_endo_phos | 94 | 242 | 4.2e-11 | 43.2 | 9.8e-15 | 4.9e-11 | 43.0 |
| pfu_aug1.0_3037.1_16009.t1 | 1 | 1 | Exo_endo_phos_2 | 98 | 245 | 2.2e-10 | 40.1 | 6.7e-14 | 3.3e-10 | 39.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3037.1_16009.t1 | gi|260808574|ref|XP_002599082.1| | hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3037.1_16009.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3037.1_16009.t1 atgccaccaaagcgaaaggctgccaagggcaaagggaaaactgatgaggagacagtatcaaaaaaagcaaaggtagagga tgaaccaacagaggagccagaaaaaccaaagaagggtaaaggaaaagggaaagcggctgccaaaccaaagaaagaagcga gtgtggagagcctgccagatgatgcagatacatccttccctactgaagttaatccagactgtaaaaccccagacggtatt aagaaacatgatgatgagggcagagtgataacagcggaatatgataagtttttccttgttactgcttatgtgccaaatgc tggaaaaggtcttgtaaggttaaactatcgccacaaggaatgggacgtggcatttaaagaacatctgaagaaactagacg ctaaaaaacctgtcataatgtgcggggacctcaacgttgctcataaagaaatagatctcaagaatcccaaatcaaataag aacaagacagctgggttcacagaccaggaacgacaaggttttaccgatctcctggatgcagggtttgtggactcgttcag atttctgtatcctaatgccagggaatgctggtcattctggtcatatatgatgaacgctagggccaaaaacattggatgga gactggactattttgtaatatcagagaggttgaaggcagatctatgtgacagtattatacaacagtcctatatgggcagt gaccactgtccgatcatgctattgatgtcattcaaatag |
|
Protein
| Protein ID | pfu_aug1.0_3037.1_16009.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3037.1_16009.t1 MPPKRKAAKGKGKTDEETVSKKAKVEDEPTEEPEKPKKGKGKGKAAAKPKKEASVESLPDDADTSFPTEVNPDCKTPDGI KKHDDEGRVITAEYDKFFLVTAYVPNAGKGLVRLNYRHKEWDVAFKEHLKKLDAKKPVIMCGDLNVAHKEIDLKNPKSNK NKTAGFTDQERQGFTDLLDAGFVDSFRFLYPNARECWSFWSYMMNARAKNIGWRLDYFVISERLKADLCDSIIQQSYMGS DHCPIMLLMSFK |
|