Gene
| Gene Model ID | pfu_aug1.0_30445.1_26527 |
|---|---|
| Locus | scaffold30445.1 : 1 ... 4278 : + |
| To GenomeBrowser | scaffold30445.1:1..4278 |
| Genes list of scaffold | scaffold30445.1 |
| Synonym | pfu_aug2.0_400.1_00706 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Pax-6 |
| Description | BLAST hits to AM422131.1 and simple NJ tree also showed an affinity to pax6. (human) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_30445.1_26527.t1 | 1 | 1 | PAX | 55 | 137 | 3.8e-12 | 46.0 | 2.4e-15 | 7.2e-12 | 45.1 |
| pfu_aug1.0_30445.1_26527.t1 | 1 | 1 | DDE_3 | 177 | 324 | 3.8e-18 | 65.6 | 2.5e-21 | 7.5e-18 | 64.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_30445.1_26527.t1 | gi|291227879|ref|XP_002733909.1| | PREDICTED: uncharacterized protein LOC100377317 [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_30445.1_26527.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_30445.1_26527.t1 gtacgctatccagacttctactttcgttttccatgtattctaatgctaaaaagctgatgagtaccaagcagacggccggt agtttgaccgccattaacggcatacgggccatcagtatatcatgggttgttttaggacacaccttcatcttcgtcattac attctcataaaagacttgtctttcaaagggcggatgttacaaaataattaagaactcaattgaagttcccaagctgtcaa ccaggggtaaacccaggagtgttagctctgacgaagttgtttccttcatagaatatatgaagaagaaatctccttcaata caaataaaggaaattcgagcaaaactgctagaacatgggatatgtaccgaaaatgaattgccatccattacaacaataag tagaattattcgggattatctcggcatgacgcgcaagattatggaacaagtacctcatgagacaacatcggatcaccatg atacacttgttaataattatatgagttctattttgacctacaagccagaacaaattcattttttcgacgagtgctcggtg gtccgtacctctggtaatagaagatacggtcattcgttgtcgggtgaacgcgcagtagaggtgcagagatatgcaagcaa tgcaaagtacacactgaacttgctttgcaatattttcgaaatagggcacttcgaaatcatagagggtgcttcaaatgctt tagaaatgctcgattttttccagcgttccgttcatgagaagaactcgatgggcaaccctatctttaaccgtggggatgtt gtcgtcatggacaactgcggcttccatcaccatagggtatacgaagggcgactgcgcaatttacttaaccagattggagt agaattagtgttccagcccccgtactcaccggaacttaatgcttgtgaatatgtgttccatttaatgaaagaaaaattgc gtcaaaattcggagtttacatatgactacaccgaattggccataacacgagctctgactaaagttgagtctagatcaata agccaaatttatcgaaaatgcggatatgtatga |
|
Protein
| Protein ID | pfu_aug1.0_30445.1_26527.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_30445.1_26527.t1 TLSRLLLSFSMYSNAKKLMSTKQTAGSLTAINGIRAISISWVVLGHTFIFVITFSXKTCLSKGGCYKIIKNSIEVPKLST RGKPRSVSSDEVVSFIEYMKKKSPSIQIKEIRAKLLEHGICTENELPSITTISRIIRDYLGMTRKIMEQVPHETTSDHHD TLVNNYMSSILTYKPEQIHFFDECSVVRTSGNRRYGHSLSGERAVEVQRYASNAKYTLNLLCNIFEIGHFEIIEGASNAL EMLDFFQRSVHEKNSMGNPIFNRGDVVVMDNCGFHHHRVYEGRLRNLLNQIGVELVFQPPYSPELNACEYVFHLMKEKLR QNSEFTYDYTELAITRALTKVESRSISQIYRKCGYV |
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