Gene
| Gene Model ID | pfu_aug1.0_3060.1_44568 |
|---|---|
| Locus | scaffold3060.1 : 12110 ... 29085 : - |
| To GenomeBrowser | scaffold3060.1:12110..29085 |
| Genes list of scaffold | scaffold3060.1 |
| Synonym | pfu_aug2.0_60.1_00154 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3060.1_44568.t1 | 1 | 1 | Ribosomal_L10 | 21 | 119 | 6.2e-22 | 77.4 | 1.2e-25 | 9.3e-22 | 76.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3060.1_44568.t1 | gi|260790436|ref|XP_002590248.1| | hypothetical protein BRAFLDRAFT_254316 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3060.1_44568.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3060.1_44568.t1 atgccgaagtctaaaagagacaagaaaatttctttgacgcagacaaagaagaaaggattagaactaaaacagaaacttat tgaggatattcagcaatgtgcagacaaatacaagaggatttttacattttccgtgcacaacatgagaaacattcagttga agcaagttcgtcaggaatggaagcacagcaggtttttctttggtaagaataaagtgatgtgccttgccctgggtagaacg gacggtgaggagtacaaggacaacctacacaagctcagcagtcagctccgagggcagactggacttctgttcactaacaa atcaaaggaggaggttctaaagttctttgatgctttttctgtatcggactatgccagatctggcaatgaagctccacaga cagttattctagaagctggacctgttccagaattctctcattcgatggagccacagttacgacagcttggtctacccaca agtcttcaaaagggtgtgattacattactgagagaacatactgtgtgtgaacaaggagatattttgacccccgagcaagc caggatattgaaattatttggacatgaaatgtcggaattcagaataacaatagaaggagtgtggtccgatggcaactggg agatcctggatgaccggccattacctataacaccaactaaagtcaaagtcaaagctaaagtgaaaaaagatgaattggaa gaggaagatgaagatgtacaagaggagatcatggatgatgatgaagatgatgaagatgatacttga |
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Protein
| Protein ID | pfu_aug1.0_3060.1_44568.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3060.1_44568.t1 MPKSKRDKKISLTQTKKKGLELKQKLIEDIQQCADKYKRIFTFSVHNMRNIQLKQVRQEWKHSRFFFGKNKVMCLALGRT DGEEYKDNLHKLSSQLRGQTGLLFTNKSKEEVLKFFDAFSVSDYARSGNEAPQTVILEAGPVPEFSHSMEPQLRQLGLPT SLQKGVITLLREHTVCEQGDILTPEQARILKLFGHEMSEFRITIEGVWSDGNWEILDDRPLPITPTKVKVKAKVKKDELE EEDEDVQEEIMDDDEDDEDDT |
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