Gene
| Gene Model ID | pfu_aug1.0_30641.1_33762 |
|---|---|
| Locus | scaffold30641.1 : 1 ... 11164 : - |
| To GenomeBrowser | scaffold30641.1:1..11164 |
| Genes list of scaffold | scaffold30641.1 |
| Synonym | pfu_aug2.0_1372.1_08340 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_30641.1_33762.t1 | 1 | 1 | RNA_pol_Rpb4 | 2 | 51 | 6.5e-17 | 61.6 | 9.1e-21 | 6.8e-17 | 61.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_30641.1_33762.t1 | gi|260841580|ref|XP_002613990.1| | hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae] | 1.0e-21 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_30641.1_33762.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_30641.1_33762.t1 ggtactgatgaataaaaaacttcataaatttgaaatagcagtgctagccaatctttgtccagataatgcagaggaggcca agtctctaatacctagcttagaaggaagatttgaagatgatgagcttcagcagatattagaggacatccaaacaaagagg agctttcagtattga |
|
Protein
| Protein ID | pfu_aug1.0_30641.1_33762.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_30641.1_33762.t1 VLMNKKLHKFEIAVLANLCPDNAEEAKSLIPSLEGRFEDDELQQILEDIQTKRSFQY |
|