Gene
| Gene Model ID | pfu_aug1.0_3068.1_23153 |
|---|---|
| Locus | scaffold3068.1 : 6100 ... 11465 : - |
| To GenomeBrowser | scaffold3068.1:6100..11465 |
| Genes list of scaffold | scaffold3068.1 |
| Synonym | pfu_aug2.0_935.1_17953 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | matrilin like protein |
| Description | matrilin like protein, best hit to BLAST AEW42986.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3068.1_23153.t1 | 2 | 1 | VWA | 34 | 204 | 0.0 | 162.2 | 5.5e-38 | 1.6e-34 | 119.1 |
| pfu_aug1.0_3068.1_23153.t1 | 2 | 1 | VWA_2 | 34 | 201 | 7.3e-15 | 55.4 | 7.3e-15 | 2.2e-11 | 44.1 |
| pfu_aug1.0_3068.1_23153.t1 | 2 | 2 | VWA | 236 | 395 | 0.0 | 162.2 | 2.5e-15 | 7.3e-12 | 45.3 |
| pfu_aug1.0_3068.1_23153.t1 | 2 | 2 | VWA_2 | 329 | 381 | 7.3e-15 | 55.4 | 0.00033 | 0.99 | 9.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3068.1_23153.t1 | gi|166406787|gb|ABY87357.1| | collagen type XXI-like protein [Haliotis diversicolor] | 2.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3068.1_23153.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3068.1_23153.t1 atgatgaagtgcattttacctctatttgctatgatatcagtcctttatgcagcacctgcattagaaagaaatataagatg gtgcaaaggtaagccagccgatgtgtttttcctgttggacagttcctccagtatatggatcgttgactaccgaaaacaac tgaacttcgctgctaacgttacagactttttccaggtttcggaggacaagactcgtattgcagcggccgctttttcgaac agatattcacaaaaatttgaatttggtgattacaacggcacggacaacctaagggagaaaattcatgaaatgccatattt gactggtggcacaaaaacagacattgctttgaagaaaatgagggaatcttttcaaacaaatgctagaaaaggagtagccc acattgcattcgtagtcactgatggaaattcagagtcatttaaggagactcggagggaggccgaaaagctgaaaaaggac ggagtatacgtgtttgccattggaattggccgtagaattagtaataaggaattgagagccatagggagcgaaccagagga ggagtttgtgtaccaagtggaggattttgataggctgaatgacatcagagacactgtcagagatacactagattactcta cttgtcaagcacctactaccccaccccctatggacgagccgagatgtagcgccaaatctgatgttgacgttgttttcgca ctggatgcaccttccatgggcattgagcaaactcgcagcgtgtacaacttcattggagaagtgacagaggaaattcacga cgatttaggtagagtgcaggttggaatgatgtcaaaaatttgtaatgaccatgatatacagctgaaacaatacaaagatg aattttcactagctcagacaatatcaaatgccaagttcaaagggttggaccatcaacttcataaacttcgtcacgaagga tacagcttggaaaatggcggaagaccgaatgctaagaaggttgctgtgctttttgttgatgacagtatagaaaaatacga ttccctgcttttggaggctgaagatgcaaagattagaaatggtattgatgtgtacgttgtggccattggagacaatgtaa actatgcagcttgtggtttgatggccagcaaaccaagcaacgttatcaaagtctcttctcatcgagatcttggcttacta aaagatgacttcctttttactttctgcaatgacatttga |
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Protein
| Protein ID | pfu_aug1.0_3068.1_23153.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3068.1_23153.t1 MMKCILPLFAMISVLYAAPALERNIRWCKGKPADVFFLLDSSSSIWIVDYRKQLNFAANVTDFFQVSEDKTRIAAAAFSN RYSQKFEFGDYNGTDNLREKIHEMPYLTGGTKTDIALKKMRESFQTNARKGVAHIAFVVTDGNSESFKETRREAEKLKKD GVYVFAIGIGRRISNKELRAIGSEPEEEFVYQVEDFDRLNDIRDTVRDTLDYSTCQAPTTPPPMDEPRCSAKSDVDVVFA LDAPSMGIEQTRSVYNFIGEVTEEIHDDLGRVQVGMMSKICNDHDIQLKQYKDEFSLAQTISNAKFKGLDHQLHKLRHEG YSLENGGRPNAKKVAVLFVDDSIEKYDSLLLEAEDAKIRNGIDVYVVAIGDNVNYAACGLMASKPSNVIKVSSHRDLGLL KDDFLFTFCNDI |
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