Gene
Gene Model ID | pfu_aug1.0_3068.1_23153 |
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Locus | scaffold3068.1 : 6100 ... 11465 : - |
To GenomeBrowser | scaffold3068.1:6100..11465 |
Genes list of scaffold | scaffold3068.1 |
Synonym | pfu_aug2.0_935.1_17953 |
Manual annotation
Study field | Biomineralization |
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Gene name | matrilin like protein |
Description | matrilin like protein, best hit to BLAST AEW42986.1 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_3068.1_23153.t1 | 2 | 1 | VWA | 34 | 204 | 0.0 | 162.2 | 5.5e-38 | 1.6e-34 | 119.1 |
pfu_aug1.0_3068.1_23153.t1 | 2 | 1 | VWA_2 | 34 | 201 | 7.3e-15 | 55.4 | 7.3e-15 | 2.2e-11 | 44.1 |
pfu_aug1.0_3068.1_23153.t1 | 2 | 2 | VWA | 236 | 395 | 0.0 | 162.2 | 2.5e-15 | 7.3e-12 | 45.3 |
pfu_aug1.0_3068.1_23153.t1 | 2 | 2 | VWA_2 | 329 | 381 | 7.3e-15 | 55.4 | 0.00033 | 0.99 | 9.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_3068.1_23153.t1 | gi|166406787|gb|ABY87357.1| | collagen type XXI-like protein [Haliotis diversicolor] | 2.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_3068.1_23153.t1 |
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Definition | - |
>pfu_aug1.0_3068.1_23153.t1 atgatgaagtgcattttacctctatttgctatgatatcagtcctttatgcagcacctgcattagaaagaaatataagatg gtgcaaaggtaagccagccgatgtgtttttcctgttggacagttcctccagtatatggatcgttgactaccgaaaacaac tgaacttcgctgctaacgttacagactttttccaggtttcggaggacaagactcgtattgcagcggccgctttttcgaac agatattcacaaaaatttgaatttggtgattacaacggcacggacaacctaagggagaaaattcatgaaatgccatattt gactggtggcacaaaaacagacattgctttgaagaaaatgagggaatcttttcaaacaaatgctagaaaaggagtagccc acattgcattcgtagtcactgatggaaattcagagtcatttaaggagactcggagggaggccgaaaagctgaaaaaggac ggagtatacgtgtttgccattggaattggccgtagaattagtaataaggaattgagagccatagggagcgaaccagagga ggagtttgtgtaccaagtggaggattttgataggctgaatgacatcagagacactgtcagagatacactagattactcta cttgtcaagcacctactaccccaccccctatggacgagccgagatgtagcgccaaatctgatgttgacgttgttttcgca ctggatgcaccttccatgggcattgagcaaactcgcagcgtgtacaacttcattggagaagtgacagaggaaattcacga cgatttaggtagagtgcaggttggaatgatgtcaaaaatttgtaatgaccatgatatacagctgaaacaatacaaagatg aattttcactagctcagacaatatcaaatgccaagttcaaagggttggaccatcaacttcataaacttcgtcacgaagga tacagcttggaaaatggcggaagaccgaatgctaagaaggttgctgtgctttttgttgatgacagtatagaaaaatacga ttccctgcttttggaggctgaagatgcaaagattagaaatggtattgatgtgtacgttgtggccattggagacaatgtaa actatgcagcttgtggtttgatggccagcaaaccaagcaacgttatcaaagtctcttctcatcgagatcttggcttacta aaagatgacttcctttttactttctgcaatgacatttga |
Protein
Protein ID | pfu_aug1.0_3068.1_23153.t1 |
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Definition | - |
>pfu_aug1.0_3068.1_23153.t1 MMKCILPLFAMISVLYAAPALERNIRWCKGKPADVFFLLDSSSSIWIVDYRKQLNFAANVTDFFQVSEDKTRIAAAAFSN RYSQKFEFGDYNGTDNLREKIHEMPYLTGGTKTDIALKKMRESFQTNARKGVAHIAFVVTDGNSESFKETRREAEKLKKD GVYVFAIGIGRRISNKELRAIGSEPEEEFVYQVEDFDRLNDIRDTVRDTLDYSTCQAPTTPPPMDEPRCSAKSDVDVVFA LDAPSMGIEQTRSVYNFIGEVTEEIHDDLGRVQVGMMSKICNDHDIQLKQYKDEFSLAQTISNAKFKGLDHQLHKLRHEG YSLENGGRPNAKKVAVLFVDDSIEKYDSLLLEAEDAKIRNGIDVYVVAIGDNVNYAACGLMASKPSNVIKVSSHRDLGLL KDDFLFTFCNDI |