Gene
| Gene Model ID | pfu_aug1.0_307.1_50780 |
|---|---|
| Locus | scaffold307.1 : 9406 ... 24518 : + |
| To GenomeBrowser | scaffold307.1:9406..24518 |
| Genes list of scaffold | scaffold307.1 |
| Synonym | pfu_aug2.0_63.1_10221 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_307.1_50780.t1 | 2 | 1 | KH_3 | 150 | 174 | 5.6e-06 | 25.8 | 2.3e-08 | 0.00011 | 21.7 |
| pfu_aug1.0_307.1_50780.t1 | 2 | 2 | KH_3 | 284 | 301 | 5.6e-06 | 25.8 | 0.069 | 340.0 | 1.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_307.1_50780.t1 | gi|260786115|ref|XP_002588104.1| | hypothetical protein BRAFLDRAFT_124941 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_307.1_50780.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_307.1_50780.t1 atggaatatggtgagaaaaaagggaagaaaagcagaaaagagccgtcaaactctgaggagttacttgaagtgccacctgg atggaaagaccctggcataacaaaggaagacaaccctcatggaatgttggcagagagctcatttgcaacattgtttccaa aatacagagaaaaatacctcagggagtgctggcctctggtaaaaaaagtgttaagtgactataatataaaagcagagttg gatgtagcagaaggcagcatgactgtattaacaacaagaaagacatgggatccatttatgatcataaaagccagagatat gatcaaacttctagctcgtagtgtcccttatgaacaggcggttagaattctagaagatgatatggcctgtgatatcatca agattggttcgttggtccgtaataaggagaggtttgtgaagagacgtcgtaggctgataggaccaaacggctcgactctc aaagccatcgagatactcacaaactgttatgtcctggtccaaggaaacacagtgtcagctttaggtccacacaaagggct caaagaggtcagaaaaattgcagaggagaccatgaaaaatatacatccaatatacaatttaaagacactgatgattaaaa gagagttagagaaagaccctaagctaaaaaatgaaagctgggacagatttttaccaaagtttaagtcgaagaatatcagc aaaaggaaacagcaaccaaagaagaaaaagattaagaaagcctatactccattccctccacctcagcctgaaagcaaggt cgacaaggaactggcttcaggtgaatacttccttaaatctggtcagaagaaagcaaaaattcaatttgagaagagggaaa aacagaaagagtctgttgagaggaagaaagagaaacgtgccatggcttttgtggcacctgaagaacctgaaccaatcgca aagaaacagaaaacttcagacgttaatgttgatgatctcaagaagaagataaaaaaggcacagaaattcaaaacaaggaa aacggacaaggtttcttga |
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Protein
| Protein ID | pfu_aug1.0_307.1_50780.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_307.1_50780.t1 MEYGEKKGKKSRKEPSNSEELLEVPPGWKDPGITKEDNPHGMLAESSFATLFPKYREKYLRECWPLVKKVLSDYNIKAEL DVAEGSMTVLTTRKTWDPFMIIKARDMIKLLARSVPYEQAVRILEDDMACDIIKIGSLVRNKERFVKRRRRLIGPNGSTL KAIEILTNCYVLVQGNTVSALGPHKGLKEVRKIAEETMKNIHPIYNLKTLMIKRELEKDPKLKNESWDRFLPKFKSKNIS KRKQQPKKKKIKKAYTPFPPPQPESKVDKELASGEYFLKSGQKKAKIQFEKREKQKESVERKKEKRAMAFVAPEEPEPIA KKQKTSDVNVDDLKKKIKKAQKFKTRKTDKVS |
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