Gene
| Gene Model ID | pfu_aug1.0_308.1_29187 |
|---|---|
| Locus | scaffold308.1 : 52268 ... 63935 : - |
| To GenomeBrowser | scaffold308.1:52268..63935 |
| Genes list of scaffold | scaffold308.1 |
| Synonym | pfu_aug2.0_1666.1_21732 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_308.1_29187.t1 | 1 | 1 | zf-HIT | 4 | 32 | 7.8e-09 | 35.0 | 2.1e-12 | 7.8e-09 | 35.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_308.1_29187.t1 | gi|327276661|ref|XP_003223086.1| | PREDICTED: box C/D snoRNA protein 1 [Anolis carolinensis] | 6.0e-38 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_308.1_29187.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_308.1_29187.t1 atgtcaaagaggaagtgtgaagtatgtgatgaagtaattgccaaatatacatgtccacgctgccaaaaaaggacttgttc attatcatgtgtgaagaaacataaaggagaaaccaagtgtgatggaattcgagataaaactgcctatttaccaatgaagg aattcacagatatagctcttttgaatgattacagatttctagaagaagcaggaagaatagcagacaattctaaaagagat cctaaaaaacgcagaattacacatgctggatatttgaatcaggtgagttatggtgacattttgtggcatgtagaacttat ctttccggaggctgaagccaagtacacagaatcaagggtaaatgaaaatacaacactacaagacatattgaggggatata tccatcctacagagtcagacccggttaaacgacagaagctgaaattgtactgtgtcaatggatctgtggattataaagta ttcctcaggaaggaaagatccccagccaatgatgttaggcgcatcagaatggtatcgacgaaagataaaacgtatcgagt ttcaaaatttaaagtgatttgtattgtccaacgttccattcttatccgcaccttttag |
|
Protein
| Protein ID | pfu_aug1.0_308.1_29187.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_308.1_29187.t1 MSKRKCEVCDEVIAKYTCPRCQKRTCSLSCVKKHKGETKCDGIRDKTAYLPMKEFTDIALLNDYRFLEEAGRIADNSKRD PKKRRITHAGYLNQVSYGDILWHVELIFPEAEAKYTESRVNENTTLQDILRGYIHPTESDPVKRQKLKLYCVNGSVDYKV FLRKERSPANDVRRIRMVSTKDKTYRVSKFKVICIVQRSILIRTF |
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