Gene
| Gene Model ID | pfu_aug1.0_308.1_29190 |
|---|---|
| Locus | scaffold308.1 : 106719 ... 114445 : - |
| To GenomeBrowser | scaffold308.1:106719..114445 |
| Genes list of scaffold | scaffold308.1 |
| Synonym | pfu_aug2.0_1666.1_21730 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_308.1_29190.t1 | 1 | 1 | Metallophos | 46 | 175 | 2.9e-36 | 124.7 | 2.29999e-40 | 3.4e-36 | 124.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_308.1_29190.t1 | gi|260794991|ref|XP_002592490.1| | hypothetical protein BRAFLDRAFT_113834 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 2 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_308.1_29190.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_308.1_29190.t1 atgaaagcggacgttgatagatggattgaaattgccaaagagtgcaagtacttacctgaaaatgacttgaagaaactatg tgatatggtatgtgagcttttgttggaagaatccaatgtccagccagtgtccacaccggtcactgtgtgtggagatatcc atggacagttttacgacttgatggaacttttccgtactggtggccaatgtccagacacaaattatattttcatgggagat tttgttgacagaggctattatagtttagagacattcaccctgttactcacactgaaagcaaggtggccagacagaataat attgttacggggaaatcatgaaagtagacagattacacagatatatggattttatgatgaatgtcagacaaagtacggga atgccaatgcctggcgctgctgtaccaaagtgtttgatttactcacagtagctgctattatagatgagtgtgttctatgt gtccatggtggtttatccccagatataaagacgatagatcagattcgtaccatagaaaggaaccaagaaatacctcacaa aggagccttctgtgattttcatgagttatag |
|
Protein
| Protein ID | pfu_aug1.0_308.1_29190.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_308.1_29190.t1 MKADVDRWIEIAKECKYLPENDLKKLCDMVCELLLEESNVQPVSTPVTVCGDIHGQFYDLMELFRTGGQCPDTNYIFMGD FVDRGYYSLETFTLLLTLKARWPDRIILLRGNHESRQITQIYGFYDECQTKYGNANAWRCCTKVFDLLTVAAIIDECVLC VHGGLSPDIKTIDQIRTIERNQEIPHKGAFCDFHEL |
|