Gene
| Gene Model ID | pfu_aug1.0_308.1_29191 |
|---|---|
| Locus | scaffold308.1 : 117223 ... 124255 : - |
| To GenomeBrowser | scaffold308.1:117223..124255 |
| Genes list of scaffold | scaffold308.1 |
| Synonym | pfu_aug2.0_1666.1_21729 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | interferon-gamma-inducible lysosomal thiol reductase |
| Description | reciprocal BLASTN best hit to NCBI Accession GQ480838the CDS also exist in pfu_aug1.0_90690.1_06153.t1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_308.1_29191.t1 | 1 | 1 | GILT | 2 | 111 | 8.7e-29 | 99.5 | 2.0e-32 | 1.5e-28 | 98.8 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_308.1_29191.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_308.1_29191.t1 atggtcaattttacgttatattttgagtcaaattgtccggactgtaaaaactttttccgttcccagttgtcaccaaacta tgaaaaactcagtggaataatgaatctcaccttggtaccttatggaaatgcaagggaacaaaaatccgggtctggaaaat ggaagtttacttgtcaacacggaaaagaggaatgcatcggaaatcttatagagacttgtgccattcacctaatgaagaac atctcatcttactttccctttatttcctgtatagaaaatgatcagttcgcagaaccacaagacagcgctgaaaagtgtgc caagaagctaggagtagactttaagtctatcaaggaatgtgccaatagtgatctaggtaacaaactggaacatgagatgg ctgtccgtacagacgcacttagtcctccacacaaatatgtaccatgggtcactctgaacggggtccatactgaggatatt gaacaacaagctgagaaagacctcgtcaagcttatttgtggagcatacaagggttctgacaaaccggcgatatgtggtga aatcaaaactaccagacgctgctacagatactag |
|
Protein
| Protein ID | pfu_aug1.0_308.1_29191.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_308.1_29191.t1 MVNFTLYFESNCPDCKNFFRSQLSPNYEKLSGIMNLTLVPYGNAREQKSGSGKWKFTCQHGKEECIGNLIETCAIHLMKN ISSYFPFISCIENDQFAEPQDSAEKCAKKLGVDFKSIKECANSDLGNKLEHEMAVRTDALSPPHKYVPWVTLNGVHTEDI EQQAEKDLVKLICGAYKGSDKPAICGEIKTTRRCYRY |
|