Gene
| Gene Model ID | pfu_aug1.0_30807.1_47993 |
|---|---|
| Locus | scaffold30807.1 : 2372 ... 6685 : - |
| To GenomeBrowser | scaffold30807.1:2372..6685 |
| Genes list of scaffold | scaffold30807.1 |
| Synonym | pfu_aug2.0_1394.1_15007 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Testis-specific serine/threonine kinase 4 |
| Description | Best hit to DQ397204 (mouse). 244 bits, 2e-62 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_30807.1_47993.t1 | 1 | 1 | Pkinase | 41 | 283 | 0.0 | 207.7 | 0.0 | 0.0 | 207.4 |
| pfu_aug1.0_30807.1_47993.t1 | 1 | 1 | Pkinase_Tyr | 41 | 282 | 3.9e-40 | 137.5 | 1.59748e-43 | 4.9e-40 | 137.2 |
| pfu_aug1.0_30807.1_47993.t1 | 1 | 1 | Kinase-like | 151 | 277 | 4.4e-08 | 32.4 | 2.5e-11 | 7.4e-08 | 31.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_30807.1_47993.t1 | gi|260834629|ref|XP_002612312.1| | hypothetical protein BRAFLDRAFT_80072 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_30807.1_47993.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_30807.1_47993.t1 atgggaaatgaagaaaaagaggaaaatcaaaaggaggagacaagtacaggggatgctgcagcggcaagcaagggacgggc atgtaaacgatttcaagttcttgaaagtcaaggatttattgtagggaaaactttgggacaaggatcttacgcatgcgtgc gatctgcttatgatgtgaacagaaaacacaaagttgctgtgaaaattatatcgaaaaagaaagcaccggaggacttcctt ataaaattccttccccgggagatagaagtaatcaaaatcttaaagcatccttcattaattgccttctaccaagttataga aacaaccacgaggtattttattgtaatggaaatgggacacactgatttgctagattacatacgacagaacaagcgtattg atgagttacgggctggtgtaatgtttaggcagctacaggatggtatgtgttacatgcacagtaaagcaatagttcatcgt gatttgaagtgtgagaacattctccttgaccatcatttacatataaagatcacagatttcggatttgccaagaaaattac aaaatcaaaatcaggcgatatcaagctcagtgagacgtactgcggcagctatgcgtatgctcctccggagatattacgtg gtacgccgtacgatccgtattgtgctgatgtgtggagtataggcgttgtccttttcaccatgttgtatggacgtcttcca tttgacgattccaatcacaaaaagctactgaaacaaattcaacaaaaagtggtattcccaggaaaacctgatgtgtccga ggagtgccgtatacttatattgaagatgttggtcaaggctcctgatcgaattcctttatccaatatacgatttgatactt ggttcaaaaaatttgaggagtcacttttacacatacatgaaatgccgaaggagacaccagagggagcattagaacagaaa ggatga |
|
Protein
| Protein ID | pfu_aug1.0_30807.1_47993.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_30807.1_47993.t1 MGNEEKEENQKEETSTGDAAAASKGRACKRFQVLESQGFIVGKTLGQGSYACVRSAYDVNRKHKVAVKIISKKKAPEDFL IKFLPREIEVIKILKHPSLIAFYQVIETTTRYFIVMEMGHTDLLDYIRQNKRIDELRAGVMFRQLQDGMCYMHSKAIVHR DLKCENILLDHHLHIKITDFGFAKKITKSKSGDIKLSETYCGSYAYAPPEILRGTPYDPYCADVWSIGVVLFTMLYGRLP FDDSNHKKLLKQIQQKVVFPGKPDVSEECRILILKMLVKAPDRIPLSNIRFDTWFKKFEESLLHIHEMPKETPEGALEQK G |
|